RNA–Protein interactions for RNA: YDR439W

LRS4, Transcript of Nucleolar protein that forms a complex with Csm1p, yeast

Gene LRS4, Length 1,044 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LRS4	YDR439W	RET3	P53600	189 aa		3.21	□□□□□ -1.9
LRS4	YDR439W	YNR048W	P53740	393 aa		3.21	□□□□□ -1.9
LRS4	YDR439W	FRE4	P53746	719 aa		3.21	□□□□□ -1.9
LRS4	YDR439W	COS1	P53822	381 aa		3.21	□□□□□ -1.9
LRS4	YDR439W	ODC1	Q03028	310 aa		3.21	□□□□□ -1.9
LRS4	YDR439W	RSN1	Q03516	953 aa		3.21	□□□□□ -1.9
LRS4	YDR439W	RNA1	P11745	407 aa	Known RBP	3.2	□□□□□ -1.9
LRS4	YDR439W	THR4	P16120	514 aa	Known RBP	3.2	□□□□□ -1.9
LRS4	YDR439W	OM45	P16547	393 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	EXO70	P19658	623 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	DBR1	P24309	405 aa	Known RBP	3.2	□□□□□ -1.9
LRS4	YDR439W	ATS1	P31386	333 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	GLC7	P32598	312 aa	Known RBP	3.2	□□□□□ -1.9
LRS4	YDR439W	LOS1	P33418	1100 aa	Predicted RBP	3.2	□□□□□ -1.9
LRS4	YDR439W	RRP1	P35178	278 aa	Predicted RBP	3.2	□□□□□ -1.9
LRS4	YDR439W	LCP5	P40079	357 aa	Predicted RBP	3.2	□□□□□ -1.9
LRS4	YDR439W	AIM20	P40451	204 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	ABM1	P47146	123 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	RRP46	P53256	223 aa	Predicted RBP	3.2	□□□□□ -1.9
LRS4	YDR439W	MMT1	Q03218	510 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	VPS74	Q06385	345 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	AAD15	Q08361	143 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	SGT1	Q08446	395 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	PEX27	Q08580	376 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	TIP41	Q12199	356 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	CSR2	Q12734	1121 aa		3.2	□□□□□ -1.9
LRS4	YDR439W	CDC37	P06101	506 aa	Known RBP	3.19	□□□□□ -1.9
LRS4	YDR439W	GAL3	P13045	520 aa		3.19	□□□□□ -1.9
LRS4	YDR439W	SEC1	P30619	724 aa	Known RBP	3.19	□□□□□ -1.9
LRS4	YDR439W	RIM2	P38127	377 aa		3.19	□□□□□ -1.9
LRS4	YDR439W	MNN9	P39107	395 aa	Known RBP	3.19	□□□□□ -1.9
LRS4	YDR439W	YJL070C	P40361	888 aa		3.19	□□□□□ -1.9
LRS4	YDR439W	AIP1	P46680	615 aa	Known RBP	3.19	□□□□□ -1.9
LRS4	YDR439W	GCD14	P46959	383 aa	Predicted RBP	3.19	□□□□□ -1.9
LRS4	YDR439W	IMP4	P53941	290 aa	Known RBP	3.19	□□□□□ -1.9
LRS4	YDR439W	ASA1	Q06822	443 aa		3.19	□□□□□ -1.9
LRS4	YDR439W	YEH2	Q07950	538 aa		3.19	□□□□□ -1.9
LRS4	YDR439W	RAD61	Q99359	647 aa		3.19	□□□□□ -1.9
LRS4	YDR439W	HEM2	P05373	342 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	YAR066W	P0CX18	203 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	YHR214W	P0CX19	203 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	GCD2	P12754	651 aa	Predicted RBP	3.18	□□□□□ -1.9
LRS4	YDR439W	HXT2	P23585	541 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	PET18	P25362	215 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	MMF1	P40185	145 aa	Known RBP	3.18	□□□□□ -1.9
LRS4	YDR439W	MKT1	P40850	830 aa	Known RBP	3.18	□□□□□ -1.9
LRS4	YDR439W	IKS1	P47042	667 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	YDL186W	P48568	277 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	RPN14	P53196	417 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	POP6	P53218	158 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	DBP6	P53734	629 aa	Known RBP	3.18	□□□□□ -1.9
LRS4	YDR439W	CRZ1	P53968	678 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	3.18	□□□□□ -1.9	not detected
LRS4	YDR439W	BET5	Q03630	159 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	AIM33	Q04516	312 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	REX4	Q08237	289 aa		3.18	□□□□□ -1.9
LRS4	YDR439W	ARG4	P04076	463 aa	Predicted RBP	3.17	□□□□□ -1.9
LRS4	YDR439W	RNR2	P09938	399 aa	Known RBP	3.17	□□□□□ -1.9
LRS4	YDR439W	MAS1	P10507	462 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	MSK1	P32048	576 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	ZUO1	P32527	433 aa	Known RBP	3.17	□□□□□ -1.9
LRS4	YDR439W	SSE1	P32589	693 aa	Known RBP	3.17	□□□□□ -1.9
LRS4	YDR439W	YHR218W	P38899	603 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	ALP1	P38971	573 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	MST28	P39552	234 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	SHO1	P40073	367 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	YFR018C	P43599	363 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	ALF1	P53904	254 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	ARP5	P53946	755 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	MRP51	Q02950	344 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	TIM18	Q08749	192 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	SPO24	Q3E752	67 aa		3.17	□□□□□ -1.9
LRS4	YDR439W	TEF1	P02994	458 aa	Known RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	RPL15A	P05748	204 aa	Known RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	SSC1	P0CS90	654 aa	Known RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	PUT4	P15380	627 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	MSS116	P15424	664 aa	Known RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	HMX1	P32339	317 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	VAM7	P32912	316 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	SPT10	P35208	640 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	RSM22	P36056	628 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	ATP3	P38077	311 aa	Known RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	MTC4	P38335	694 aa	Known RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	RPR2	P40571	144 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	DIM1	P41819	318 aa	Known RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	YFR016C	P43597	1233 aa	Known RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	AZR1	P50080	613 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	RIB4	P50861	169 aa	Predicted RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	GRX3	Q03835	250 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	YMR310C	Q04867	317 aa	Predicted RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	RLP24	Q07915	199 aa	Known RBP	3.16	□□□□□ -1.9
LRS4	YDR439W	LDS2	Q08218	356 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	AYT1	Q12226	474 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	FSH3	Q99369	266 aa		3.16	□□□□□ -1.9
LRS4	YDR439W	SAM1	P10659	382 aa	Known RBP	3.15	□□□□□ -1.91
LRS4	YDR439W	ARF1	P11076	181 aa	Known RBP	3.15	□□□□□ -1.91
LRS4	YDR439W	SAM2	P19358	384 aa	Known RBP	3.15	□□□□□ -1.91
LRS4	YDR439W	CKI1	P20485	582 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	FAR1	P21268	830 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	SLM5	P25345	492 aa	Known RBP	3.15	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 22.1 ms