RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	RAD30	Q04049	632 aa		13.21	□□□□□ -0.29
DEP1	YAL013W	SWA2	Q06677	668 aa		13.21	□□□□□ -0.29
DEP1	YAL013W	YTM1	Q12024	460 aa	Predicted RBP	13.21	□□□□□ -0.29
DEP1	YAL013W	MRX4	Q12467	430 aa		13.21	□□□□□ -0.29
DEP1	YAL013W	RPB5	P20434	215 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	VPH2	P32341	215 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	YAR028W	P39548	234 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	TPA1	P40032	644 aa	Known RBP	13.2	□□□□□ -0.3
DEP1	YAL013W	PRE6	P40303	254 aa	Known RBP	13.2	□□□□□ -0.3
DEP1	YAL013W	CFD1	P40558	293 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	CAK1	P43568	368 aa	Predicted RBP	13.2	□□□□□ -0.3
DEP1	YAL013W	BIT61	P47041	543 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	YGR012W	P53206	393 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	RSC9	Q03124	581 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	RIM13	Q03792	727 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	DIC1	Q06143	298 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	GIC2	Q06648	383 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	DCI1	Q08558	271 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	SKM1	Q12469	655 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	SKS1	Q12505	502 aa		13.2	□□□□□ -0.3
DEP1	YAL013W	KSS1	P14681	368 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	DBP3	P20447	523 aa	Known RBP	13.19	□□□□□ -0.3
DEP1	YAL013W	MRPS28	P21771	286 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	IMG1	P25626	169 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	13.19	□□□□□ -0.3	not detected
DEP1	YAL013W	PET112	P33893	541 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	SPO73	P40031	143 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	MRPS18	P42847	217 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	YFL066C	P43538	392 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	YNL181W	P53878	407 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	ERG13	P54839	491 aa	Known RBP	13.19	□□□□□ -0.3
DEP1	YAL013W	YPL107W	Q02873	248 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	YPL119C-A	Q3E751	87 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	YOR019W	Q99248	730 aa		13.19	□□□□□ -0.3
DEP1	YAL013W	CSF1	Q12150	2958 aa		13.18	□□□□□ -0.3
DEP1	YAL013W	RHB1	P25378	209 aa		13.18	□□□□□ -0.3
DEP1	YAL013W	GDH2	P33327	1092 aa	Known RBP	13.18	□□□□□ -0.3
DEP1	YAL013W	YBR238C	P38330	731 aa	Known RBP	13.18	□□□□□ -0.3
DEP1	YAL013W	TDA11	P38854	504 aa		13.18	□□□□□ -0.3
DEP1	YAL013W	RCY1	P39531	840 aa		13.18	□□□□□ -0.3
DEP1	YAL013W	SNM1	P40993	198 aa		13.18	□□□□□ -0.3
DEP1	YAL013W	EMC2	P47133	292 aa	Known RBP	13.18	□□□□□ -0.3
DEP1	YAL013W	PRM8	P53174	237 aa		13.18	□□□□□ -0.3
DEP1	YAL013W	BSC6	Q08280	497 aa		13.18	□□□□□ -0.3
DEP1	YAL013W	YPL066W	Q12194	479 aa		13.18	□□□□□ -0.3
DEP1	YAL013W	SEC2	P17065	759 aa		13.17	□□□□□ -0.3
DEP1	YAL013W	RER1	P25560	188 aa		13.17	□□□□□ -0.3
DEP1	YAL013W	CDC12	P32468	407 aa	Known RBP	13.17	□□□□□ -0.3
DEP1	YAL013W	GIP2	P40036	548 aa		13.17	□□□□□ -0.3
DEP1	YAL013W	SWP1	Q02795	286 aa		13.17	□□□□□ -0.3
DEP1	YAL013W	YEH1	Q07804	573 aa		13.17	□□□□□ -0.3
DEP1	YAL013W	FDH1	Q08911	376 aa		13.17	□□□□□ -0.3
DEP1	YAL013W	YCR006C	P25350	157 aa		13.16	□□□□□ -0.3
DEP1	YAL013W	RPN2	P32565	945 aa	Known RBP	13.16	□□□□□ -0.3
DEP1	YAL013W	YME2	P32843	850 aa		13.16	□□□□□ -0.3
DEP1	YAL013W	MSN2	P33748	704 aa		13.16	□□□□□ -0.3
DEP1	YAL013W	SIC1	P38634	284 aa		13.16	□□□□□ -0.3
DEP1	YAL013W	BIG1	P38813	335 aa		13.16	□□□□□ -0.3
DEP1	YAL013W	SPO19	Q03029	223 aa		13.16	□□□□□ -0.3
DEP1	YAL013W	ENT2	Q05785	613 aa		13.16	□□□□□ -0.3
DEP1	YAL013W	NKP1	Q12493	238 aa		13.16	□□□□□ -0.3
DEP1	YAL013W	HFA1	P32874	2273 aa		13.15	□□□□□ -0.3
DEP1	YAL013W	CYR1	P08678	2026 aa	Known RBP	13.15	□□□□□ -0.3
DEP1	YAL013W	THR1	P17423	357 aa	Known RBP	13.15	□□□□□ -0.3
DEP1	YAL013W	AAC3	P18238	307 aa		13.15	□□□□□ -0.3
DEP1	YAL013W	SSE2	P32590	693 aa	Known RBP	13.15	□□□□□ -0.3
DEP1	YAL013W	PTR2	P32901	601 aa		13.15	□□□□□ -0.3
DEP1	YAL013W	AHP1	P38013	176 aa	Known RBP	13.15	□□□□□ -0.3
DEP1	YAL013W	COG3	P40094	801 aa		13.15	□□□□□ -0.3
DEP1	YAL013W	YIL086C	P40503	102 aa		13.15	□□□□□ -0.3
DEP1	YAL013W	COG5	P53951	403 aa		13.15	□□□□□ -0.3
DEP1	YAL013W	YLR126C	Q12288	251 aa		13.15	□□□□□ -0.3
DEP1	YAL013W	DBP10	Q12389	995 aa	Known RBP	13.15	□□□□□ -0.3
DEP1	YAL013W	TPK3	P05986	398 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	CBS1	P14066	229 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	YJU2	P28320	278 aa	Predicted RBP	13.14	□□□□□ -0.31
DEP1	YAL013W	NUF2	P33895	451 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	SPC42	P36094	363 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	AUR1	P36107	401 aa	Predicted RBP	13.14	□□□□□ -0.31
DEP1	YAL013W	YIL152W	P40455	235 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	TIM54	P47045	478 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	TWF1	P53250	332 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	NRM1	P53718	249 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	ELP4	Q02884	456 aa	Known RBP	13.14	□□□□□ -0.31
DEP1	YAL013W	SMP3	Q04174	516 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	RNH202	Q05635	350 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	YLR456W	Q06199	204 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	ATG17	Q06410	417 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	NFI1	Q12216	726 aa		13.14	□□□□□ -0.31
DEP1	YAL013W	CAN1	P04817	590 aa		13.13	□□□□□ -0.31
DEP1	YAL013W	RRP7	P25368	297 aa	Predicted RBP	13.13	□□□□□ -0.31
DEP1	YAL013W	TEF4	P36008	412 aa	Known RBP	13.13	□□□□□ -0.31
DEP1	YAL013W	LHS1	P36016	881 aa		13.13	□□□□□ -0.31
DEP1	YAL013W	GOS1	P38736	223 aa		13.13	□□□□□ -0.31
DEP1	YAL013W	AAD10	P47182	288 aa		13.13	□□□□□ -0.31
DEP1	YAL013W	RPS12	P48589	143 aa	Known RBP	13.13	□□□□□ -0.31
DEP1	YAL013W	MTQ1	P53944	314 aa		13.13	□□□□□ -0.31
DEP1	YAL013W	KRE28	Q04431	385 aa		13.13	□□□□□ -0.31
DEP1	YAL013W	YDR061W	Q12298	539 aa		13.13	□□□□□ -0.31
DEP1	YAL013W	PET9	P18239	318 aa	Known RBP	13.12	□□□□□ -0.31

Retrieved 100 of 5,963 RNA–protein pairs in 34.7 ms