RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 RPAINQ86UA6 219 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 NOSTRINQ8IVI9 506 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 TMEM199Q8N511 208 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 TEKT3Q9BXF9 490 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 UBE2OQ9C0C9 1292 aaKnown RBP20.66■□□□□ 0.9
CLN3-259ENST00000637551 HDAC6Q9UBN7 1215 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 SMC3Q9UQE7 1217 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 NOD1Q9Y239 953 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 TRIP12Q14669 1992 aaPredicted RBP20.65■□□□□ 0.9
CLN3-259ENST00000637551 COL1A2P08123 1366 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 RRN3P2A6NIE6 340 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 K7ELQ4 463 aaPredicted RBP20.65■□□□□ 0.9
CLN3-259ENST00000637551 TDP2O95551 362 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 CCNE2O96020 404 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 PSAPP07602 524 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 SMIM10L2AP0DMW4 78 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 SMIM10L2BP0DMW5 78 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 STAT5BP51692 787 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 ADAM17P78536 824 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 PPIGQ13427 754 aaKnown RBP eCLIP20.65■□□□□ 0.96e-7■■□□□ 11.8
CLN3-259ENST00000637551 SH3RF1Q7Z6J0 888 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 SERINC5Q86VE9 423 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 GLG1Q92896 1179 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 TRPV6Q9H1D0 765 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 TRMT13Q9NUP7 481 aaKnown RBP20.65■□□□□ 0.9
CLN3-259ENST00000637551 EYSQ5T1H1 3165 aa20.65■□□□□ 0.9
CLN3-259ENST00000637551 IGSF9BQ9UPX0 1349 aa20.64■□□□□ 0.89
CLN3-259ENST00000637551 C17orf102A2RUQ5 167 aa20.64■□□□□ 0.89
CLN3-259ENST00000637551 CCNT1O60563 726 aaKnown RBP20.64■□□□□ 0.89
CLN3-259ENST00000637551 FPGSQ05932 587 aa20.64■□□□□ 0.89
CLN3-259ENST00000637551 PPP2R5CQ13362 524 aa20.64■□□□□ 0.89
CLN3-259ENST00000637551 GDF6Q6KF10 455 aaPredicted RBP20.64■□□□□ 0.89
CLN3-259ENST00000637551 TAF2Q6P1X5 1199 aa20.64■□□□□ 0.89
CLN3-259ENST00000637551 FAM167AQ96KS9 214 aa20.64■□□□□ 0.89
CLN3-259ENST00000637551 GUCD1Q96NT3 240 aa20.64■□□□□ 0.89
CLN3-259ENST00000637551 CTAGE1Q96RT6 745 aa20.64■□□□□ 0.89
CLN3-259ENST00000637551 PKD2L1Q9P0L9 805 aa20.64■□□□□ 0.89
CLN3-259ENST00000637551 MAFBQ9Y5Q3 323 aaPredicted RBP20.64■□□□□ 0.89
CLN3-259ENST00000637551 MBLAC1A4D2B0 266 aaPredicted RBP20.63■□□□□ 0.89
CLN3-259ENST00000637551 BAG4O95429 457 aaKnown RBP20.63■□□□□ 0.89
CLN3-259ENST00000637551 GJB2P29033 226 aa20.63■□□□□ 0.89
CLN3-259ENST00000637551 SP4Q02446 784 aa20.63■□□□□ 0.89
CLN3-259ENST00000637551 FAM109BQ6ICB4 259 aaPredicted RBP20.63■□□□□ 0.89
CLN3-259ENST00000637551 PCYT2Q99447 389 aa20.63■□□□□ 0.89
CLN3-259ENST00000637551 PRDM6Q9NQX0 595 aa20.63■□□□□ 0.89
CLN3-259ENST00000637551 SLC37A4O43826 429 aa20.62■□□□□ 0.89
CLN3-259ENST00000637551 HBP1O60381 514 aa20.62■□□□□ 0.89
CLN3-259ENST00000637551 SORBS3O60504 671 aa20.62■□□□□ 0.89
CLN3-259ENST00000637551 DKC1O60832 514 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLN3-259ENST00000637551 GNL2Q13823 731 aaKnown RBP20.62■□□□□ 0.89
CLN3-259ENST00000637551 EARS2Q5JPH6 523 aaKnown RBP20.62■□□□□ 0.89
CLN3-259ENST00000637551 UTP14CQ5TAP6 766 aaKnown RBP20.62■□□□□ 0.89
CLN3-259ENST00000637551 TRIM50Q86XT4 487 aa20.62■□□□□ 0.89
CLN3-259ENST00000637551 ATP8B4Q8TF62 1192 aa20.62■□□□□ 0.89
CLN3-259ENST00000637551 BBXQ8WY36 941 aaPredicted RBP20.62■□□□□ 0.89
CLN3-259ENST00000637551 BADQ92934 168 aa20.62■□□□□ 0.89
CLN3-259ENST00000637551 RNPEPQ9H4A4 650 aa20.62■□□□□ 0.89
CLN3-259ENST00000637551 ZNF302Q9NR11 478 aa20.62■□□□□ 0.89
CLN3-259ENST00000637551 DISC1Q9NRI5 854 aa20.62■□□□□ 0.89
CLN3-259ENST00000637551 NOL7Q9UMY1 257 aaKnown RBP20.62■□□□□ 0.89
CLN3-259ENST00000637551 CEP131Q9UPN4 1083 aa20.62■□□□□ 0.89
CLN3-259ENST00000637551 NEMFO60524 1076 aa20.61■□□□□ 0.89
CLN3-259ENST00000637551 ITGB8P26012 769 aa20.61■□□□□ 0.89
CLN3-259ENST00000637551 PPFIA1Q13136 1202 aa20.61■□□□□ 0.89
CLN3-259ENST00000637551 PSRC1Q6PGN9 363 aaPredicted RBP20.61■□□□□ 0.89
CLN3-259ENST00000637551 CCDC60Q8IWA6 550 aaPredicted RBP20.61■□□□□ 0.89
CLN3-259ENST00000637551 RPUSD2Q8IZ73 545 aaKnown RBP20.61■□□□□ 0.89
CLN3-259ENST00000637551 ZNF710Q8N1W2 664 aa20.61■□□□□ 0.89
CLN3-259ENST00000637551 RETREG2Q8NC44 543 aa20.61■□□□□ 0.89
CLN3-259ENST00000637551 LMBR1Q8WVP7 490 aa20.61■□□□□ 0.89
CLN3-259ENST00000637551 ATP6V0A1Q93050 837 aa20.61■□□□□ 0.89
CLN3-259ENST00000637551 POTEB3A0JP26 581 aa20.6■□□□□ 0.89
CLN3-259ENST00000637551 LAD1O00515 517 aa20.6■□□□□ 0.89
CLN3-259ENST00000637551 BACH1O14867 736 aa20.6■□□□□ 0.89
CLN3-259ENST00000637551 POTEBQ6S5H4 581 aa20.6■□□□□ 0.89
CLN3-259ENST00000637551 VAV3Q9UKW4 847 aa20.6■□□□□ 0.89
CLN3-259ENST00000637551 PPME1Q9Y570 386 aa20.6■□□□□ 0.89
CLN3-259ENST00000637551 PRUNE2Q8WUY3 3088 aa20.6■□□□□ 0.89
CLN3-259ENST00000637551 H3BQV1 296 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 SELPP16109 830 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 MDM2Q00987 491 aaPredicted RBP20.59■□□□□ 0.89
CLN3-259ENST00000637551 PLCB4Q15147 1175 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 GRIK4Q16099 956 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 TRIM71Q2Q1W2 868 aaKnown RBP20.59■□□□□ 0.89
CLN3-259ENST00000637551 RILPL1Q5EBL4 403 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 ZNF484Q5JVG2 852 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 PDXDC2PQ6P474 469 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 NEK9Q8TD19 979 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 HAS1Q92839 578 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 WNT8AQ9H1J5 351 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 IL23AQ9NPF7 189 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 TUBE1Q9UJT0 475 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 TELO2Q9Y4R8 837 aa20.59■□□□□ 0.89
CLN3-259ENST00000637551 DDX39AO00148 427 aaKnown RBP20.58■□□□□ 0.89
CLN3-259ENST00000637551 CYP2C9P11712 490 aa20.58■□□□□ 0.89
CLN3-259ENST00000637551 CALCRLQ16602 461 aa20.58■□□□□ 0.89
CLN3-259ENST00000637551 LARP1BQ659C4 914 aaKnown RBP20.58■□□□□ 0.89
CLN3-259ENST00000637551 MIER3Q7Z3K6 550 aa20.58■□□□□ 0.89
CLN3-259ENST00000637551 BRAPQ7Z569 592 aa20.58■□□□□ 0.89
CLN3-259ENST00000637551 RSPH3Q86UC2 560 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms