RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 ALPK3Q96L96 1907 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 C17orf102A2RUQ5 167 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 CHMP2AO43633 222 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 HBP1O60381 514 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 SMIM10L2AP0DMW4 78 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 SMIM10L2BP0DMW5 78 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 PRPHP41219 470 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 TXKP42681 527 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 TOB1P50616 345 aaPredicted RBP10.76□□□□□ -0.69
CCDC40-214ENST00000575431 EPHA7Q15375 998 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 TMEM266Q2M3C6 531 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 ARL6IP4Q66PJ3 421 aaKnown RBP10.76□□□□□ -0.69
CCDC40-214ENST00000575431 TRIM50Q86XT4 487 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 CCDC60Q8IWA6 550 aaPredicted RBP10.76□□□□□ -0.69
CCDC40-214ENST00000575431 NEK9Q8TD19 979 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 ATP8B4Q8TF62 1192 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 PCYT2Q99447 389 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 RNPEPQ9H4A4 650 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 PDLIM7Q9NR12 457 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.76□□□□□ -0.69
CCDC40-214ENST00000575431 NRBP2Q9NSY0 501 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 GABBR1Q9UBS5 961 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 VAV3Q9UKW4 847 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 TBX21Q9UL17 535 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 MTMR6Q9Y217 621 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 IGSF9BQ9UPX0 1349 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 COL1A2P08123 1366 aa10.76□□□□□ -0.69
CCDC40-214ENST00000575431 POTEB3A0JP26 581 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 PITPNM1O00562 1244 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 B4GALT4O60513 344 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 CAND2O75155 1236 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 PARNO95453 639 aaKnown RBP10.75□□□□□ -0.69
CCDC40-214ENST00000575431 P4HBP07237 508 aaKnown RBP10.75□□□□□ -0.69
CCDC40-214ENST00000575431 RAG1P15918 1043 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 HOXC8P31273 242 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 QARSP47897 775 aaKnown RBP10.75□□□□□ -0.69
CCDC40-214ENST00000575431 PSMC5P62195 406 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 PPFIA1Q13136 1202 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 PTGDRQ13258 359 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 PTK7Q13308 1070 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 BFSP2Q13515 415 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 PDIA5Q14554 519 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 PLCB4Q15147 1175 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 ZNF484Q5JVG2 852 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 GDF6Q6KF10 455 aaPredicted RBP10.75□□□□□ -0.69
CCDC40-214ENST00000575431 TAF2Q6P1X5 1199 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 POTEBQ6S5H4 581 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 CKAP2LQ8IYA6 745 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 RETREG2Q8NC44 543 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 ERMNQ8TAM6 284 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 CAGE1Q8TC20 777 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 UIMC1Q96RL1 719 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 LBHD1Q9BQE6 289 aaPredicted RBP10.75□□□□□ -0.69
CCDC40-214ENST00000575431 TRPV6Q9H1D0 765 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 PRDM5Q9NQX1 630 aaPredicted RBP10.75□□□□□ -0.69
CCDC40-214ENST00000575431 TRMT13Q9NUP7 481 aaKnown RBP10.75□□□□□ -0.69
CCDC40-214ENST00000575431 TRPC6Q9Y210 931 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 TELO2Q9Y4R8 837 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 PCDHB6Q9Y5E3 794 aa10.75□□□□□ -0.69
CCDC40-214ENST00000575431 MYH9P35579 1960 aaKnown RBP10.74□□□□□ -0.69
CCDC40-214ENST00000575431 H0YGN5 161 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 WNT7AO00755 349 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 TIMP1P01033 207 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 INSRRP14616 1297 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 MARK3P27448 753 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 FXR2P51116 673 aaKnown RBP eCLIP10.74□□□□□ -0.69
CCDC40-214ENST00000575431 ADAM17P78536 824 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 ATP2C1P98194 919 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-214ENST00000575431 RBL2Q08999 1139 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 SPIRE1Q08AE8 756 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 RESTQ13127 1097 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 GRIK4Q16099 956 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 XKR3Q5GH77 459 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 PRPF38BQ5VTL8 546 aaKnown RBP10.74□□□□□ -0.69
CCDC40-214ENST00000575431 HAUS3Q68CZ6 603 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 NCAPH2Q6IBW4 605 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 DTHD1Q6ZMT9 781 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 FERMT3Q86UX7 667 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 SERINC5Q86VE9 423 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 C4orf19Q8IY42 314 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 TMEM199Q8N511 208 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 C4orf32Q8N8J7 132 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 LMBR1Q8WVP7 490 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 GJA10Q969M2 543 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 TMEM60Q9H2L4 133 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 HIPK3Q9H422 1215 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 ZSWIM4Q9H7M6 989 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 SETD4Q9NVD3 440 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 DAXXQ9UER7 740 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-214ENST00000575431 ZMYND8Q9ULU4 1186 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-214ENST00000575431 PPME1Q9Y570 386 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 KAT6AQ92794 2004 aa10.74□□□□□ -0.69
CCDC40-214ENST00000575431 MBLAC1A4D2B0 266 aaPredicted RBP10.73□□□□□ -0.69
CCDC40-214ENST00000575431 TRIM43BA6NCK2 446 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 EML1O00423 815 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 MAGEB2O15479 319 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 LYPLA2O95372 231 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 OATP04181 439 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 ZSCAN22P10073 491 aaPredicted RBP10.73□□□□□ -0.69
CCDC40-214ENST00000575431 XRCC6P12956 609 aaKnown RBP eCLIP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms