RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 LRRC63Q05C16 580 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 DNAJC21Q5F1R6 531 aaKnown RBP14.59□□□□□ -0.07
VPS4A-204ENST00000566354 DLK2Q6UY11 383 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 APOBEC3FQ8IUX4 373 aaKnown RBP14.59□□□□□ -0.07
VPS4A-204ENST00000566354 TBCKQ8TEA7 893 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 HPS3Q969F9 1004 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 MMRN2Q9H8L6 949 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 MLXIPQ9HAP2 919 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 SEC63Q9UGP8 760 aaKnown RBP14.59□□□□□ -0.07
VPS4A-204ENST00000566354 DMGDHQ9UI17 866 aaKnown RBP14.59□□□□□ -0.07
VPS4A-204ENST00000566354 EPHB6O15197 1021 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 PAFAH1B1P43034 410 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 MAGEA1P43355 309 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 CCDC181Q5TID7 509 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 FOXR2Q6PJQ5 311 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 SND1Q7KZF4 910 aaKnown RBP eCLIP14.58□□□□□ -0.08
VPS4A-204ENST00000566354 CCDC155Q8N6L0 562 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 L3MBTL3Q96JM7 780 aaPredicted RBP14.58□□□□□ -0.08
VPS4A-204ENST00000566354 BLOC1S4Q9NUP1 217 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 FZD1Q9UP38 647 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 FRMPD2Q68DX3 1309 aaPredicted RBP14.58□□□□□ -0.08
VPS4A-204ENST00000566354 ESYT2A0FGR8 921 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 GLTPD2A6NH11 291 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 GOLGA8KD6RF30 607 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 OPA1O60313 960 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 TXKP42681 527 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 EPHB4P54760 987 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 GRB10Q13322 594 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 EMBQ6PCB8 327 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 GBP6Q6ZN66 633 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 RRAGAQ7L523 313 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 REXO1Q8N1G1 1221 aaKnown RBP14.58□□□□□ -0.08
VPS4A-204ENST00000566354 RNF10Q8N5U6 811 aaKnown RBP14.58□□□□□ -0.08
VPS4A-204ENST00000566354 HDAC7Q8WUI4 952 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 MTMR9Q96QG7 549 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 ZBTB21Q9ULJ3 1066 aa14.58□□□□□ -0.08
VPS4A-204ENST00000566354 MYMKA6NI61 221 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 LRRC53A6NM62 1247 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 PHF20L1A8MW92 1017 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 RAD21O60216 631 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 CAP2P40123 477 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 FXR2P51116 673 aaKnown RBP eCLIP14.57□□□□□ -0.08
VPS4A-204ENST00000566354 PPFIA1Q13136 1202 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 PSMD2Q13200 908 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 GLE1Q53GS7 698 aaKnown RBP14.57□□□□□ -0.08
VPS4A-204ENST00000566354 ALS2CLQ60I27 953 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 LARP4BQ92615 738 aaKnown RBP14.57□□□□□ -0.08
VPS4A-204ENST00000566354 CDK5RAP3Q96JB5 506 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 DRC1Q96MC2 740 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 SH3GL2Q99962 352 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 LRRC27Q9C0I9 530 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 FAM107BQ9H098 131 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 NYAP2Q9P242 653 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 STIM2Q9P246 746 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 TSKSQ9UJT2 592 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 SSU72P8A0A1W2PR75 194 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 A0A1W2PRG0 241 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 TNFRSF8P28908 595 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 TMEM266Q2M3C6 531 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 NFRKBQ6P4R8 1299 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 POTEDQ86YR6 584 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 PPM1EQ8WY54 764 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 BAP1Q92560 729 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 MKL1Q969V6 931 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 RAB34Q9BZG1 259 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 RIC8AQ9NPQ8 531 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 RNF14Q9UBS8 474 aa14.57□□□□□ -0.08
VPS4A-204ENST00000566354 SNHG28P0DPA3 235 aa14.56□□□□□ -0.08
VPS4A-204ENST00000566354 EPB41P11171 864 aaKnown RBP14.56□□□□□ -0.08
VPS4A-204ENST00000566354 ECE1P42892 770 aa14.56□□□□□ -0.08
VPS4A-204ENST00000566354 IRAK1P51617 712 aa14.56□□□□□ -0.08
VPS4A-204ENST00000566354 PDIA5Q14554 519 aa14.56□□□□□ -0.08
VPS4A-204ENST00000566354 CALCRLQ16602 461 aa14.56□□□□□ -0.08
VPS4A-204ENST00000566354 ASTE1Q2TB18 679 aaPredicted RBP14.56□□□□□ -0.08
VPS4A-204ENST00000566354 NOX5Q96PH1 765 aa14.56□□□□□ -0.08
VPS4A-204ENST00000566354 PNMA5Q96PV4 448 aa14.56□□□□□ -0.08
VPS4A-204ENST00000566354 UBA5Q9GZZ9 404 aa14.56□□□□□ -0.08
VPS4A-204ENST00000566354 NUCKS1Q9H1E3 243 aaKnown RBP14.56□□□□□ -0.08
VPS4A-204ENST00000566354 BIN2Q9UBW5 565 aaPredicted RBP14.56□□□□□ -0.08
VPS4A-204ENST00000566354 ATAD5Q96QE3 1844 aa14.56□□□□□ -0.08
VPS4A-204ENST00000566354 A6NNZ2 444 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 hCG_1984214I3L0E3 225 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 EPHX2P34913 555 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 MATR3P43243 847 aaKnown RBP eCLIP14.55□□□□□ -0.08
VPS4A-204ENST00000566354 MAP2K1Q02750 393 aaPredicted RBP14.55□□□□□ -0.08
VPS4A-204ENST00000566354 TUBB8Q3ZCM7 444 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 PDXDC1Q6P996 788 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 CACNA2D4Q7Z3S7 1137 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 ZNF713Q8N859 430 aaPredicted RBP14.55□□□□□ -0.08
VPS4A-204ENST00000566354 ACER1Q8TDN7 264 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 CAVIN3Q969G5 261 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 TSG101Q99816 390 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 CAPS2Q9BXY5 557 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 GPCPD1Q9NPB8 672 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 MYH10P35580 1976 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 RBAK-RBAKDNI3L0D1 243 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 HAUS3Q68CZ6 603 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 LRRC55Q6ZSA7 311 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 DYMQ7RTS9 669 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 EFCAB13Q8IY85 973 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms