RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 PDXDC2PQ6P474 469 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 FAM173BQ6P4H8 233 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 B3GNT9Q6UX72 402 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 CCDC60Q8IWA6 550 aaPredicted RBP11.32□□□□□ -0.6
USP3-216ENST00000559873 CKAP2LQ8IYA6 745 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 KCNG4Q8TDN1 519 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 GJA10Q969M2 543 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 AK8Q96MA6 479 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 CCDC43Q96MW1 224 aaKnown RBP11.32□□□□□ -0.6
USP3-216ENST00000559873 USP28Q96RU2 1077 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 C16orf70Q9BSU1 422 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 CHMP5Q9NZZ3 219 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 GABBR1Q9UBS5 961 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 LRWD1Q9UFC0 647 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 TRPC6Q9Y210 931 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 MYH15Q9Y2K3 1946 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 SCN10AQ9Y5Y9 1956 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 VWA3AA6NCI4 1184 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 POTEMA6NI47 508 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 ARVCFO00192 962 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 P4HBP07237 508 aaKnown RBP11.31□□□□□ -0.6
USP3-216ENST00000559873 GNAT1P11488 350 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 DDIT3P35638 169 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 LONP1P36776 959 aaKnown RBP11.31□□□□□ -0.6
USP3-216ENST00000559873 TXLNAP40222 546 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 TECP42680 631 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 QARSP47897 775 aaKnown RBP11.31□□□□□ -0.6
USP3-216ENST00000559873 PSMC5P62195 406 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 IRX5P78411 483 aaPredicted RBP11.31□□□□□ -0.6
USP3-216ENST00000559873 CEBPZQ03701 1054 aaKnown RBP11.31□□□□□ -0.6
USP3-216ENST00000559873 SPIRE1Q08AE8 756 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 PDIA5Q14554 519 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 SNX17Q15036 470 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 KRT79Q5XKE5 535 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 SWSAP1Q6NVH7 229 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 UBE2Q1Q7Z7E8 422 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 SESTD1Q86VW0 696 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 TRIM50Q86XT4 487 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 C4orf32Q8N8J7 132 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 BBXQ8WY36 941 aaPredicted RBP11.31□□□□□ -0.6
USP3-216ENST00000559873 NOD1Q9Y239 953 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 MAFBQ9Y5Q3 323 aaPredicted RBP11.31□□□□□ -0.6
USP3-216ENST00000559873 KDM3AQ9Y4C1 1321 aa11.31□□□□□ -0.6
USP3-216ENST00000559873 COL1A2P08123 1366 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 C17orf102A2RUQ5 167 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 DCDC2CA8MYV0 355 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 HAS3O00219 553 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 SPTLC2O15270 562 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 SLC26A4O43511 780 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 PPP6R2O75170 966 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 MUTP22033 750 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 MARK3P27448 753 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 ATN1P54259 1190 aaPredicted RBP11.3□□□□□ -0.6
USP3-216ENST00000559873 PSMC6P62333 389 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 PRKCEQ02156 737 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 PPFIA1Q13136 1202 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 SLC39A14Q15043 492 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 NBPF20Q3BBV1 942 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 FOXD4L6Q3SYB3 417 aaPredicted RBP11.3□□□□□ -0.6
USP3-216ENST00000559873 FOXD4L3Q6VB84 417 aaPredicted RBP11.3□□□□□ -0.6
USP3-216ENST00000559873 SLC39A5Q6ZMH5 540 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 KCTD17Q8N5Z5 321 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 IGSF22Q8N9C0 903 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 KRI1Q8N9T8 703 aaKnown RBP11.3□□□□□ -0.6
USP3-216ENST00000559873 RASSF8Q8NHQ8 419 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 SNX29Q8TEQ0 813 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 ATP8B4Q8TF62 1192 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 KAT2BQ92831 832 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 CDK5RAP3Q96JB5 506 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 LXNQ9BS40 222 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 SCAND2PQ9GZW5 306 aaPredicted RBP11.3□□□□□ -0.6
USP3-216ENST00000559873 ZSWIM4Q9H7M6 989 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 TUFT1Q9NNX1 390 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 NRBP2Q9NSY0 501 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 ZDHHC9Q9Y397 364 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 CLIC4Q9Y696 253 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 NRCAMQ92823 1304 aa11.3□□□□□ -0.6
USP3-216ENST00000559873 POTEB3A0JP26 581 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 RRN3P2A6NIE6 340 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 EML1O00423 815 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 HBP1O60381 514 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 PQBP1O60828 265 aaKnown RBP11.29□□□□□ -0.6
USP3-216ENST00000559873 CAPN15O75808 1086 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 OATP04181 439 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 RPLP2P05387 115 aaKnown RBP11.29□□□□□ -0.6
USP3-216ENST00000559873 SMIM10L2AP0DMW4 78 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 SMIM10L2BP0DMW5 78 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 UBA7P41226 1012 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 RTP1P59025 263 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 CYP4A11Q02928 519 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 DNM1Q05193 864 aaKnown RBP11.29□□□□□ -0.6
USP3-216ENST00000559873 PLCB4Q15147 1175 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 PTPAQ15257 358 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 CSPP1Q1MSJ5 1256 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 XKR3Q5GH77 459 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 ZNF484Q5JVG2 852 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 POTEBQ6S5H4 581 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 OTUD6AQ7L8S5 288 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 CCDC155Q8N6L0 562 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 SLC43A3Q8NBI5 491 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms