RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 VTI1AQ96AJ9 217 aa13.21□□□□□ -0.29
SNHG1-221ENST00000544983 FAM167AQ96KS9 214 aa13.21□□□□□ -0.29
SNHG1-221ENST00000544983 USP28Q96RU2 1077 aa13.21□□□□□ -0.29
SNHG1-221ENST00000544983 SCAND2PQ9GZW5 306 aaPredicted RBP13.21□□□□□ -0.29
SNHG1-221ENST00000544983 STARD7Q9NQZ5 370 aa13.21□□□□□ -0.29
SNHG1-221ENST00000544983 ZNF302Q9NR11 478 aa13.21□□□□□ -0.29
SNHG1-221ENST00000544983 SRPRBQ9Y5M8 271 aaKnown RBP13.21□□□□□ -0.29
SNHG1-221ENST00000544983 MAFBQ9Y5Q3 323 aaPredicted RBP13.21□□□□□ -0.29
SNHG1-221ENST00000544983 CLIC4Q9Y696 253 aa13.21□□□□□ -0.29
SNHG1-221ENST00000544983 SCN10AQ9Y5Y9 1956 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 CHMP2AO43633 222 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 PPP6R2O75170 966 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 GNAT1P11488 350 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 PTGS1P23219 599 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 LONP1P36776 959 aaKnown RBP13.2□□□□□ -0.3
SNHG1-221ENST00000544983 TECP42680 631 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 QARSP47897 775 aaKnown RBP13.2□□□□□ -0.3
SNHG1-221ENST00000544983 PSEN2P49810 448 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 PSMC5P62195 406 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 STK38Q15208 465 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 NCAPH2Q6IBW4 605 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 SWSAP1Q6NVH7 229 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 PDXDC2PQ6P474 469 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 FAM173BQ6P4H8 233 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 SESTD1Q86VW0 696 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 SLC43A3Q8NBI5 491 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 PAWRQ96IZ0 340 aaKnown RBP13.2□□□□□ -0.3
SNHG1-221ENST00000544983 SENP6Q9GZR1 1112 aaPredicted RBP13.2□□□□□ -0.3
SNHG1-221ENST00000544983 TUFT1Q9NNX1 390 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 LRWD1Q9UFC0 647 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 DOCK5Q9H7D0 1870 aa13.2□□□□□ -0.3
SNHG1-221ENST00000544983 IGSF9BQ9UPX0 1349 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 ARVCFO00192 962 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 SPTLC2O15270 562 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 HBP1O60381 514 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 LYPLA2O95372 231 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 ZNF286BP0CG31 522 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 RPA1P27694 616 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 IRX5P78411 483 aaPredicted RBP13.19□□□□□ -0.3
SNHG1-221ENST00000544983 DNM1Q05193 864 aaKnown RBP13.19□□□□□ -0.3
SNHG1-221ENST00000544983 ITGA7Q13683 1181 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 MFSD10Q14728 455 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 SNX17Q15036 470 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 KIAA0753Q2KHM9 967 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 UTP14CQ5TAP6 766 aaKnown RBP13.19□□□□□ -0.3
SNHG1-221ENST00000544983 CCDC60Q8IWA6 550 aaPredicted RBP13.19□□□□□ -0.3
SNHG1-221ENST00000544983 KRI1Q8N9T8 703 aaKnown RBP13.19□□□□□ -0.3
SNHG1-221ENST00000544983 KAT2BQ92831 832 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 GJA10Q969M2 543 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 TOX2Q96NM4 488 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 UIMC1Q96RL1 719 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 PCYT2Q99447 389 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 HSD17B14Q9BPX1 270 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 EIF2AK1Q9BQI3 630 aaKnown RBP13.19□□□□□ -0.3
SNHG1-221ENST00000544983 POLR3CQ9BUI4 534 aaPredicted RBP13.19□□□□□ -0.3
SNHG1-221ENST00000544983 HTATIP2Q9BUP3 242 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 ZSWIM4Q9H7M6 989 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 NRBP2Q9NSY0 501 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 TFIP11Q9UBB9 837 aaKnown RBP13.19□□□□□ -0.3
SNHG1-221ENST00000544983 GABBR1Q9UBS5 961 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 RCOR1Q9UKL0 485 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 PPME1Q9Y570 386 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 MYH9P35579 1960 aaKnown RBP13.19□□□□□ -0.3
SNHG1-221ENST00000544983 MYH15Q9Y2K3 1946 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 BRCA2P51587 3418 aa13.19□□□□□ -0.3
SNHG1-221ENST00000544983 NRCAMQ92823 1304 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 POTEB3A0JP26 581 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 VWA3AA6NCI4 1184 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 POTEMA6NI47 508 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 RRN3P2A6NIE6 340 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 EML1O00423 815 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 RPLP2P05387 115 aaKnown RBP13.18□□□□□ -0.3
SNHG1-221ENST00000544983 XRCC6P12956 609 aaKnown RBP eCLIP13.18□□□□□ -0.3
SNHG1-221ENST00000544983 CDK7P50613 346 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 SOX10P56693 466 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 CEBPZQ03701 1054 aaKnown RBP13.18□□□□□ -0.3
SNHG1-221ENST00000544983 NBPF20Q3BBV1 942 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 XKR3Q5GH77 459 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 KRT79Q5XKE5 535 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 POTEBQ6S5H4 581 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 SLC39A5Q6ZMH5 540 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 C4orf19Q8IY42 314 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 CKAP2LQ8IYA6 745 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 EXOC8Q8IYI6 725 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 C7orf31Q8N865 590 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 ZNF579Q8NAF0 562 aaKnown RBP13.18□□□□□ -0.3
SNHG1-221ENST00000544983 ATP8B4Q8TF62 1192 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 BBXQ8WY36 941 aaPredicted RBP13.18□□□□□ -0.3
SNHG1-221ENST00000544983 COL1A2P08123 1366 aa13.18□□□□□ -0.3
SNHG1-221ENST00000544983 KDM3AQ9Y4C1 1321 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 CUTAO60888 179 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 SLITRK3O94933 977 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 TXLNAP40222 546 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 IL17AQ16552 155 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 CSPP1Q1MSJ5 1256 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 OTUD6AQ7L8S5 288 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 ANKRD33Q7Z3H0 272 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 TRIM50Q86XT4 487 aa13.17□□□□□ -0.3
SNHG1-221ENST00000544983 DIS3LQ8TF46 1054 aaKnown RBP13.17□□□□□ -0.3
SNHG1-221ENST00000544983 SPATA32Q96LK8 384 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms