RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 GRXCR1A8MXD5 290 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 GNAT1P11488 350 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 MKRN4PQ13434 485 aaPredicted RBP16.12■□□□□ 0.17
USP28-209ENST00000540925 Q4G0T1 1027 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 PRR16Q569H4 304 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 MOXD1Q6UVY6 613 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 GLG1Q92896 1179 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 ZNF577Q9BSK1 485 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 PBX4Q9BYU1 374 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 MTIF3Q9H2K0 278 aaKnown RBP16.12■□□□□ 0.17
USP28-209ENST00000540925 SEMA6BQ9H3T3 888 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 ORC3Q9UBD5 711 aaPredicted RBP16.12■□□□□ 0.17
USP28-209ENST00000540925 PRUNE2Q8WUY3 3088 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 TRANK1O15050 2925 aa16.12■□□□□ 0.17
USP28-209ENST00000540925 RBAK-RBAKDNI3L0D1 243 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 MSH4O15457 936 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 DNAJB2P25686 324 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 MARK3P27448 753 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 PBX2P40425 430 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 SLC26A2P50443 739 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 PPFIA1Q13136 1202 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 PLCB4Q15147 1175 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 GRIK4Q16099 956 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 FAM26DQ5JW98 314 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 ZNF746Q6NUN9 644 aaPredicted RBP16.11■□□□□ 0.17
USP28-209ENST00000540925 B3GNT9Q6UX72 402 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 RUFY4Q6ZNE9 571 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 CCDC60Q8IWA6 550 aaPredicted RBP16.11■□□□□ 0.17
USP28-209ENST00000540925 OXER1Q8TDS5 423 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 SLC5A5Q92911 643 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 TNFRSF25Q93038 417 aa16.11■□□□□ 0.17
USP28-209ENST00000540925 PTPRSQ13332 1948 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 JAK2O60674 1132 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 BAIAP3O94812 1187 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 INSRRP14616 1297 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 ATP4AP20648 1035 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 THPOP40225 353 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 STAT5BP51692 787 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 NONOQ15233 471 aaKnown RBP eCLIP16.1■□□□□ 0.17
USP28-209ENST00000540925 ZNF697Q5TEC3 545 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 CNKSR3Q6P9H4 555 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 KRT25Q7Z3Z0 450 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 SMAP1Q8IYB5 467 aaPredicted RBP16.1■□□□□ 0.17
USP28-209ENST00000540925 ETNPPLQ8TBG4 499 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 UIMC1Q96RL1 719 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 RIT2Q99578 217 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 OSBPL7Q9BZF2 842 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 AZI2Q9H6S1 392 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 LIMCH1Q9UPQ0 1083 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 SLC4A7Q9Y6M7 1214 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 SIP14410 1827 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 GBF1Q92538 1859 aa16.1■□□□□ 0.17
USP28-209ENST00000540925 KAT6AQ92794 2004 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 RRN3P2A6NIE6 340 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 RSPH10B2B2RC85 870 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 ZBTB42B2RXF5 422 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 DDX39AO00148 427 aaKnown RBP16.09■□□□□ 0.17
USP28-209ENST00000540925 PSMD10O75832 226 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 TDP2O95551 362 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 RSPH10BP0C881 870 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 ACTN1P12814 892 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 KRT76Q01546 638 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 EARS2Q5JPH6 523 aaKnown RBP16.09■□□□□ 0.17
USP28-209ENST00000540925 TAF2Q6P1X5 1199 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 WASF1Q92558 559 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 TIFAQ96CG3 184 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 TUBE1Q9UJT0 475 aa16.09■□□□□ 0.17
USP28-209ENST00000540925 YBX2Q9Y2T7 364 aaKnown RBP16.09■□□□□ 0.17
USP28-209ENST00000540925 MAFBQ9Y5Q3 323 aaPredicted RBP16.09■□□□□ 0.17
USP28-209ENST00000540925 ATP2A2P16615 1042 aaKnown RBP16.08■□□□□ 0.16
USP28-209ENST00000540925 XBP1P17861 261 aa16.08■□□□□ 0.16
USP28-209ENST00000540925 MGAT3Q09327 533 aa16.08■□□□□ 0.16
USP28-209ENST00000540925 INF2Q27J81 1249 aa16.08■□□□□ 0.16
USP28-209ENST00000540925 PLEKHG4Q58EX7 1191 aa16.08■□□□□ 0.16
USP28-209ENST00000540925 PPP4R3AQ6IN85 833 aa16.08■□□□□ 0.16
USP28-209ENST00000540925 MIS18BP1Q6P0N0 1132 aa16.08■□□□□ 0.16
USP28-209ENST00000540925 PHOSPHO2Q8TCD6 241 aa16.08■□□□□ 0.16
USP28-209ENST00000540925 ATP8B4Q8TF62 1192 aa16.08■□□□□ 0.16
USP28-209ENST00000540925 FTOQ9C0B1 505 aaKnown RBP eCLIP16.08■□□□□ 0.16
USP28-209ENST00000540925 STXBP5LQ9Y2K9 1186 aa16.08■□□□□ 0.16
USP28-209ENST00000540925 IGSF9BQ9UPX0 1349 aa16.08■□□□□ 0.16
USP28-209ENST00000540925 WDR81Q562E7 1941 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 SPTBN5Q9NRC6 3674 aaKnown RBP16.07■□□□□ 0.16
USP28-209ENST00000540925 POTEB3A0JP26 581 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 ZBBXA8MT70 800 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 SLC37A4O43826 429 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 CHRNA1P02708 482 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 WDR5P61964 334 aaKnown RBP16.07■□□□□ 0.16
USP28-209ENST00000540925 RAB30Q15771 203 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 FAM160B1Q5W0V3 765 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 SWSAP1Q6NVH7 229 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 POTEBQ6S5H4 581 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 GJA10Q969M2 543 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 ZBTB10Q96DT7 871 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 SLC9A7Q96T83 725 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 LLPHQ9BRT6 129 aaKnown RBP16.07■□□□□ 0.16
USP28-209ENST00000540925 KCNMB3Q9NPA1 279 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 ZNF302Q9NR11 478 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 PCDHA11Q9Y5I1 949 aa16.07■□□□□ 0.16
USP28-209ENST00000540925 PCDHA10Q9Y5I2 948 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms