RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 RNF180Q86T96 592 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 AHI1Q8N157 1196 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 NXPE1Q8N323 547 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 PPM1KQ8N3J5 372 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 UBR7Q8N806 425 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 LEO1Q8WVC0 666 aaPredicted RBP6.75□□□□□ -1.33
CD44-230ENST00000528922 DDX11Q96FC9 970 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 NOX5Q96PH1 765 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 PPP1R16BQ96T49 567 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 CABP5Q9NP86 173 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 CD320Q9NPF0 282 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 RIC8BQ9NVN3 520 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 HSPBP1Q9NZL4 362 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 MAPRE3Q9UPY8 281 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 IRAK3Q9Y616 596 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.74□□□□□ -1.33
CD44-230ENST00000528922 ZNF891A8MT65 544 aaPredicted RBP6.74□□□□□ -1.33
CD44-230ENST00000528922 SCDO00767 359 aa6.74□□□□□ -1.33
CD44-230ENST00000528922 C4BPAP04003 597 aaKnown RBP6.74□□□□□ -1.33
CD44-230ENST00000528922 TXKP42681 527 aa6.74□□□□□ -1.33
CD44-230ENST00000528922 ARHGAP44Q17R89 818 aa6.74□□□□□ -1.33
CD44-230ENST00000528922 PROSER1Q86XN7 944 aa6.74□□□□□ -1.33
CD44-230ENST00000528922 KIF18BQ86Y91 864 aa6.74□□□□□ -1.33
CD44-230ENST00000528922 BHLHE22Q8NFJ8 381 aaPredicted RBP6.74□□□□□ -1.33
CD44-230ENST00000528922 DLG3Q92796 817 aa6.74□□□□□ -1.33
CD44-230ENST00000528922 GORASP1Q9BQQ3 440 aa6.74□□□□□ -1.33
CD44-230ENST00000528922 BOCQ9BWV1 1114 aa6.74□□□□□ -1.33
CD44-230ENST00000528922 FAN1Q9Y2M0 1017 aa6.74□□□□□ -1.33
CD44-230ENST00000528922 PRKAB1Q9Y478 270 aa6.74□□□□□ -1.33
CD44-230ENST00000528922 KIF27Q86VH2 1401 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 EIF4G3O43432 1585 aaKnown RBP6.73□□□□□ -1.33
CD44-230ENST00000528922 TCAF2A6NFQ2 919 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 DVL2O14641 736 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 KRT37O76014 449 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 F2P00734 622 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 C8AP07357 584 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 VIL1P09327 827 aaKnown RBP6.73□□□□□ -1.33
CD44-230ENST00000528922 PI3P19957 117 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 STAT3P40763 770 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 NKX3-2P78367 333 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 IRF9Q00978 393 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 DSG1Q02413 1049 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 CREB3L3Q68CJ9 461 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 STK32CQ86UX6 486 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 ZC3H18Q86VM9 953 aaKnown RBP6.73□□□□□ -1.33
CD44-230ENST00000528922 FAM129CQ86XR2 697 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 NGRNQ9NPE2 291 aaKnown RBP6.73□□□□□ -1.33
CD44-230ENST00000528922 B3GALT1Q9Y5Z6 326 aa6.73□□□□□ -1.33
CD44-230ENST00000528922 MAP3K1Q13233 1512 aa6.72□□□□□ -1.33
CD44-230ENST00000528922 ZNF608Q9ULD9 1512 aaPredicted RBP6.72□□□□□ -1.33
CD44-230ENST00000528922 PLA2G1BP04054 148 aaKnown RBP6.72□□□□□ -1.33
CD44-230ENST00000528922 CYP2C8P10632 490 aa6.72□□□□□ -1.33
CD44-230ENST00000528922 ATP2A2P16615 1042 aaKnown RBP6.72□□□□□ -1.33
CD44-230ENST00000528922 GJA4P35212 333 aa6.72□□□□□ -1.33
CD44-230ENST00000528922 THBS2P35442 1172 aa6.72□□□□□ -1.33
CD44-230ENST00000528922 RAP1GAPP47736 663 aa6.72□□□□□ -1.33
CD44-230ENST00000528922 LIPIQ6XZB0 460 aa6.72□□□□□ -1.33
CD44-230ENST00000528922 STRA8Q7Z7C7 330 aa6.72□□□□□ -1.33
CD44-230ENST00000528922 CAAP1Q9H8G2 361 aa6.72□□□□□ -1.33
CD44-230ENST00000528922 IFT57Q9NWB7 429 aa6.72□□□□□ -1.33
CD44-230ENST00000528922 CNOT6Q9ULM6 557 aaKnown RBP6.72□□□□□ -1.33
CD44-230ENST00000528922 KCTD3Q9Y597 815 aa6.72□□□□□ -1.33
CD44-230ENST00000528922 NPIPB6E9PJ23 425 aa6.71□□□□□ -1.34
CD44-230ENST00000528922 ITGA1P56199 1179 aa6.71□□□□□ -1.34
CD44-230ENST00000528922 KCNA10Q16322 511 aa6.71□□□□□ -1.34
CD44-230ENST00000528922 KRT26Q7Z3Y9 468 aa6.71□□□□□ -1.34
CD44-230ENST00000528922 FILIP1Q7Z7B0 1213 aa6.71□□□□□ -1.34
CD44-230ENST00000528922 CILP2Q8IUL8 1156 aa6.71□□□□□ -1.34
CD44-230ENST00000528922 CHAC2Q8WUX2 184 aa6.71□□□□□ -1.34
CD44-230ENST00000528922 KCNH7Q9NS40 1196 aa6.71□□□□□ -1.34
CD44-230ENST00000528922 H2AFY2Q9P0M6 372 aaPredicted RBP6.71□□□□□ -1.34
CD44-230ENST00000528922 ZKSCAN5Q9Y2L8 839 aa6.71□□□□□ -1.34
CD44-230ENST00000528922 PRXQ9BXM0 1461 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 RUSC2Q8N2Y8 1516 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 TSPOAP1O95153 1857 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 RASSF10A6NK89 507 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 DNAJC6O75061 913 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 LINC00310P59036 64 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 HTRA3P83110 453 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 DBPQ10586 325 aaPredicted RBP6.7□□□□□ -1.34
CD44-230ENST00000528922 ADAM9Q13443 819 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 CD276Q5ZPR3 534 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 CNKSR3Q6P9H4 555 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 TMC5Q6UXY8 1006 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 DDX46Q7L014 1031 aaKnown RBP6.7□□□□□ -1.34
CD44-230ENST00000528922 LINC00482Q8N8I6 264 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 SMC1BQ8NDV3 1235 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 FNIP1Q8TF40 1166 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 CHTF18Q8WVB6 975 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 C11orf84Q9BUA3 381 aaPredicted RBP6.7□□□□□ -1.34
CD44-230ENST00000528922 FAM126AQ9BYI3 521 aaPredicted RBP6.7□□□□□ -1.34
CD44-230ENST00000528922 SPC25Q9HBM1 224 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 OXSMQ9NWU1 459 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 THG1LQ9NWX6 298 aaKnown RBP6.7□□□□□ -1.34
CD44-230ENST00000528922 FANCD2Q9BXW9 1451 aa6.7□□□□□ -1.34
CD44-230ENST00000528922 PRAMEF25A6NGN4 478 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 GAS7O60861 476 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 HIP1RO75146 1068 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 POU3F3P20264 500 aaPredicted RBP6.69□□□□□ -1.34
CD44-230ENST00000528922 SOX5P35711 763 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms