RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 HTTP42858 3142 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 H0YGN5 161 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 M0QZ92 97 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 CCNT1O60563 726 aaKnown RBP9.1□□□□□ -0.95
USP40-216ENST00000485943 GAS7O60861 476 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 PPFIA4O75335 1185 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 ARIH2O95376 493 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 ZNF286BP0CG31 522 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 ATP2B1P20020 1258 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 SREBF1P36956 1147 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 PSMC6P62333 389 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 TLE2Q04725 743 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 FUT2Q10981 343 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 BFSP2Q13515 415 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 NTRK3Q16288 839 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 PKN1Q16512 942 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 CSPP1Q1MSJ5 1256 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 PIK3AP1Q6ZUJ8 805 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 NEK8Q86SG6 692 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 LAPTM4BQ86VI4 370 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 TMEM199Q8N511 208 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 KLHDC9Q8NEP7 349 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 TBCKQ8TEA7 893 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 SEPT1Q8WYJ6 367 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 SENP7Q9BQF6 1050 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 TEKT3Q9BXF9 490 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 UBE2OQ9C0C9 1292 aaKnown RBP9.1□□□□□ -0.95
USP40-216ENST00000485943 KATNBL1Q9H079 304 aa9.1□□□□□ -0.95
USP40-216ENST00000485943 C17orf102A2RUQ5 167 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 SPATA31C2B4DYI2 1134 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 CHMP2AO43633 222 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 ICAM3P32942 547 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 TCF7P36402 384 aaPredicted RBP9.09□□□□□ -0.95
USP40-216ENST00000485943 USP11P51784 963 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 MRPS9P82933 396 aaKnown RBP9.09□□□□□ -0.95
USP40-216ENST00000485943 PURAQ00577 322 aaKnown RBP9.09□□□□□ -0.95
USP40-216ENST00000485943 GUCY1B3Q02153 619 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 INF2Q27J81 1249 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 KIAA0753Q2KHM9 967 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 NBPF20Q3BBV1 942 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 TMEM259Q4ZIN3 620 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 LRCH2Q5VUJ6 765 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 TRMT1LQ7Z2T5 733 aaKnown RBP9.09□□□□□ -0.95
USP40-216ENST00000485943 RSPH3Q86UC2 560 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 HLA-CQ95604 372 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 INPP4AQ96PE3 977 aaPredicted RBP9.09□□□□□ -0.95
USP40-216ENST00000485943 PPP1R12CQ9BZL4 782 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 FTOQ9C0B1 505 aaKnown RBP eCLIP9.09□□□□□ -0.95
USP40-216ENST00000485943 HIPK3Q9H422 1215 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 SMARCAD1Q9H4L7 1026 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 KCNH7Q9NS40 1196 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 TBC1D22BQ9NU19 505 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 DDX25Q9UHL0 483 aaKnown RBP9.09□□□□□ -0.95
USP40-216ENST00000485943 PCDHGC3Q9UN70 934 aa9.09□□□□□ -0.95
USP40-216ENST00000485943 DOCK5Q9H7D0 1870 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 H3BRB1 525 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 TK2O00142 265 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 IPO5O00410 1097 aaKnown RBP9.08□□□□□ -0.96
USP40-216ENST00000485943 ADCY6O43306 1168 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 TRAK2O60296 914 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 JAK2O60674 1132 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 DKC1O60832 514 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP40-216ENST00000485943 LARGE1O95461 756 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 PSAPP07602 524 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 COL6A1P12109 1028 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 GCFC2P16383 781 aaKnown RBP9.08□□□□□ -0.96
USP40-216ENST00000485943 PDCP20941 246 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 MARK3P27448 753 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 IGBP1P78318 339 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 KRT76Q01546 638 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 PTPN11Q06124 597 aaPredicted RBP9.08□□□□□ -0.96
USP40-216ENST00000485943 ARHGAP1Q07960 439 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 PPIGQ13427 754 aaKnown RBP eCLIP9.08□□□□□ -0.962e-7■■□□□ 11.8
USP40-216ENST00000485943 PTGISQ16647 500 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 KRT40Q6A162 431 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 NFRKBQ6P4R8 1299 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 CCDC62Q6P9F0 684 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 NIPA1Q7RTP0 329 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 DIS3L2Q8IYB7 885 aaKnown RBP9.08□□□□□ -0.96
USP40-216ENST00000485943 RPUSD2Q8IZ73 545 aaKnown RBP9.08□□□□□ -0.96
USP40-216ENST00000485943 NSUN7Q8NE18 718 aaKnown RBP9.08□□□□□ -0.96
USP40-216ENST00000485943 EMID1Q96A84 441 aaPredicted RBP9.08□□□□□ -0.96
USP40-216ENST00000485943 TOX2Q96NM4 488 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 AIFM3Q96NN9 605 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 UIMC1Q96RL1 719 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 PHF20Q9BVI0 1012 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 TUT1Q9H6E5 874 aaKnown RBP9.08□□□□□ -0.96
USP40-216ENST00000485943 ERAP1Q9NZ08 941 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 UBIAD1Q9Y5Z9 338 aa9.08□□□□□ -0.96
USP40-216ENST00000485943 FRMPD4Q14CM0 1322 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 MYH9P35579 1960 aaKnown RBP9.07□□□□□ -0.96
USP40-216ENST00000485943 VPS37CA5D8V6 355 aaPredicted RBP9.07□□□□□ -0.96
USP40-216ENST00000485943 ZBBXA8MT70 800 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 IGHA2P01877 340 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 MMP1P03956 469 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 LGALS2P05162 132 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 CYP3A4P08684 503 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 ACTN1P12814 892 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 ITGB5P18084 799 aa9.07□□□□□ -0.96
USP40-216ENST00000485943 GJB2P29033 226 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms