RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ZNF552Q9H707 407 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 ZSWIM4Q9H7M6 989 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 PANK3Q9H999 370 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 DBR1Q9UK59 544 aaKnown RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 TRAF6Q9Y4K3 522 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 AATKQ6ZMQ8 1374 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 KIAA0232Q92628 1395 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 ALS2Q96Q42 1657 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 TRBV23OR9-2A0A075B6M9 112 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.34□□□□□ -1.87
VPS13A-208ENST00000423463 C22orf46C9J442 243 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 NPHS1O60500 1241 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 ATRNO75882 1429 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 CPP00450 1065 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 FAM153BP0C7A2 387 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 GLI4P10075 376 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 CORO7P57737 925 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 CHRNA2Q15822 529 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 NTRK3Q16288 839 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 FAM209AQ5JX71 171 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 NSMFQ6X4W1 530 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 FAM84AQ96KN4 292 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 EXOC2Q96KP1 924 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 MMP19Q99542 508 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 MTA3Q9BTC8 594 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 GCM1Q9NP62 436 aa3.34□□□□□ -1.87
VPS13A-208ENST00000423463 PPARGC1AQ9UBK2 798 aaKnown RBP3.34□□□□□ -1.87
VPS13A-208ENST00000423463 CDK12Q9NYV4 1490 aaPredicted RBP3.34□□□□□ -1.88
VPS13A-208ENST00000423463 CGNL1Q0VF96 1302 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 KIF7Q2M1P5 1343 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 TRAV20A0A0B4J274 112 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 IQCA1LA6NCM1 817 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 F8W031 263 aaPredicted RBP3.34□□□□□ -1.88
VPS13A-208ENST00000423463 LTBRP36941 435 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 MC3RP41968 323 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 IFRD2Q12894 506 aaPredicted RBP3.34□□□□□ -1.88
VPS13A-208ENST00000423463 CCDC144BQ3MJ40 725 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 ATG14Q6ZNE5 492 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 CEP68Q76N32 757 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 PLEKHO2Q8TD55 490 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 SGSM3Q96HU1 749 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 SLC38A3Q99624 504 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 CDC6Q99741 560 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 PHF20Q9BVI0 1012 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 CCDC113Q9H0I3 377 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 KANSL2Q9H9L4 492 aa3.34□□□□□ -1.88
VPS13A-208ENST00000423463 MBD1Q9UIS9 605 aaPredicted RBP3.34□□□□□ -1.88
VPS13A-208ENST00000423463 SLIT3O75094 1523 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 SPATA31A5Q5VU36 1347 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 SPATA31A7Q8IWB4 1347 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 CYBBP04839 570 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 TXKP42681 527 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 DLG4P78352 724 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 PRR5P85299 388 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 MAP4K2Q12851 820 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 KCNAB2Q13303 367 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 PKN1Q16512 942 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 ZC3H14Q6PJT7 736 aaKnown RBP3.33□□□□□ -1.88
VPS13A-208ENST00000423463 CABP7Q86V35 215 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 PIF1Q9H611 641 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 CNTD2Q9H8S5 307 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 SIRT5Q9NXA8 310 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 KNSTRNQ9Y448 316 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 CCDC7Q96M83 1385 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 AKAP12Q02952 1782 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 SPATA31A1Q5TZJ5 1347 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 FGFR1P11362 822 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 RPL11P62913 178 aaKnown RBP3.33□□□□□ -1.88
VPS13A-208ENST00000423463 E4F1Q66K89 784 aaPredicted RBP3.33□□□□□ -1.88
VPS13A-208ENST00000423463 PAQR3Q6TCH7 311 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 DPH6Q7L8W6 267 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 KRTAP19-1Q8IUB9 90 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 ZBTB38Q8NAP3 1195 aaPredicted RBP3.33□□□□□ -1.88
VPS13A-208ENST00000423463 IP6K1Q92551 441 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 TMEM169Q96HH4 297 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 SYT3Q9BQG1 590 aa3.33□□□□□ -1.88
VPS13A-208ENST00000423463 THRAP3Q9Y2W1 955 aaKnown RBP3.33□□□□□ -1.88
VPS13A-208ENST00000423463 OVOS2A0A0J9YW53 1432 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 OVOS2Q6IE36 1432 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 NSD3Q9BZ95 1437 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 KRTAP9-6A0A140TA67 174 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 NFIBO00712 420 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 SRGAP3O43295 1099 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 MYO1BO43795 1136 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 TSPAN15O95858 294 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 AMPHP49418 695 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 CDR1P51861 262 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 SSPNQ14714 243 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 LILRB2Q8N423 598 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 TCP11L2Q8N4U5 519 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 NLGN2Q8NFZ4 835 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 TRMT2BQ96GJ1 504 aaKnown RBP3.32□□□□□ -1.88
VPS13A-208ENST00000423463 CCDC140Q96MF4 163 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 JAM3Q9BX67 310 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.32□□□□□ -1.88
VPS13A-208ENST00000423463 TIMM13Q9Y5L4 95 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-208ENST00000423463 COL14A1Q05707 1796 aaKnown RBP3.32□□□□□ -1.88
VPS13A-208ENST00000423463 MON2Q7Z3U7 1717 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 NSD2O96028 1365 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 MAP3K19Q56UN5 1328 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms