RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 SHOX2O60902 331 aaPredicted RBP14.18□□□□□ -0.14
PTPRN-202ENST00000409251 CALM1P0DP23 149 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 CALM2P0DP24 149 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 CALM3P0DP25 149 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 DPEP1P16444 411 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 TCP1P17987 556 aaKnown RBP14.18□□□□□ -0.14
PTPRN-202ENST00000409251 CCNHP51946 323 aaPredicted RBP14.18□□□□□ -0.14
PTPRN-202ENST00000409251 SEPT2Q15019 361 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 GNPTABQ3T906 1256 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 APOBEC3HQ6NTF7 200 aaKnown RBP14.18□□□□□ -0.14
PTPRN-202ENST00000409251 SLC30A10Q6XR72 485 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 SLF2Q8IX21 1173 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 BLIDQ8IZY5 108 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 CDK5RAP3Q96JB5 506 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 PHF20Q9BVI0 1012 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 LRRC14Q15048 493 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 OTUD6AQ7L8S5 288 aa14.18□□□□□ -0.14
PTPRN-202ENST00000409251 DIAPH2O60879 1101 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 DDAH1O94760 285 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 GCFC2P16383 781 aaKnown RBP14.17□□□□□ -0.14
PTPRN-202ENST00000409251 ERFP50548 548 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 CACNB1Q02641 598 aaPredicted RBP14.17□□□□□ -0.14
PTPRN-202ENST00000409251 PRKG1Q13976 671 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 SBK1Q52WX2 424 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 ANKRD40Q6AI12 368 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 FUKQ8N0W3 1084 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 CASKIN2Q8WXE0 1202 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 TMEM60Q9H2L4 133 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 CAPN11Q9UMQ6 739 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 BCS1LQ9Y276 419 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 CENPFP49454 3210 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 COL5A3P25940 1745 aaPredicted RBP14.17□□□□□ -0.14
PTPRN-202ENST00000409251 RAD51CO43502 376 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 HLA-DOAP06340 250 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 ZBED6P86452 979 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 NT5DC1Q5TFE4 455 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 ALS2CLQ60I27 953 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 IRF2BP1Q8IU81 584 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 CCDC63Q8NA47 563 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 SEC16BQ96JE7 1060 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 SH3GL2Q99962 352 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 PAIP2Q9BPZ3 127 aaKnown RBP14.17□□□□□ -0.14
PTPRN-202ENST00000409251 PLCG2P16885 1265 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 TXKP42681 527 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 POLR2FP61218 127 aaKnown RBP14.17□□□□□ -0.14
PTPRN-202ENST00000409251 STK4Q13043 487 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 TCERG1LQ5VWI1 586 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 TBC1D5Q92609 795 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 PRCCQ92733 491 aaPredicted RBP14.17□□□□□ -0.14
PTPRN-202ENST00000409251 FERMT2Q96AC1 680 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 ARHGAP20Q9P2F6 1191 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 GJA3Q9Y6H8 435 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 CACNA1SQ13698 1873 aa14.17□□□□□ -0.14
PTPRN-202ENST00000409251 MMP14P50281 582 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 PFKFB3Q16875 520 aaPredicted RBP14.16□□□□□ -0.14
PTPRN-202ENST00000409251 FMNL3Q8IVF7 1028 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 CELF4Q9BZC1 486 aaKnown RBP14.16□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L10C9JJH3 530 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 FNTAP49354 379 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 PPP4CP60510 307 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 ARFGAP2Q8N6H7 521 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 CALR3Q96L12 384 aaKnown RBP14.16□□□□□ -0.14
PTPRN-202ENST00000409251 OSBPL7Q9BZF2 842 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 ZNF287Q9HBT7 754 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.16□□□□□ -0.14
PTPRN-202ENST00000409251 AMACRQ9UHK6 382 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 FBXL5Q9UKA1 691 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 C4AP0C0L4 1744 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 AP1G2O75843 785 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 FAM107AO95990 144 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 SMTNP53814 917 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 DAAM2Q86T65 1068 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 ANKRD42Q8N9B4 389 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 RNF217Q8TC41 542 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 CSRNP1Q96S65 589 aa14.16□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L15C9J2P7 530 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L13C9JLJ4 530 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L11C9JVI0 530 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L18D6R9N7 530 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L22D6RA61 530 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L17D6RBQ6 530 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L19D6RCP7 530 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L20D6RJB6 530 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 DAPK3O43293 454 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 PDHA1P08559 390 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 BRD2P25440 801 aaKnown RBP14.15□□□□□ -0.14
PTPRN-202ENST00000409251 TECP42680 631 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 SCTRP47872 440 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 UBXN2AP68543 259 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L24Q0WX57 530 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 USP17L6PQ6QN14 398 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 DGKHQ86XP1 1220 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 SGSM3Q96HU1 749 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 PACSIN1Q9BY11 444 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 ZCWPW1Q9H0M4 648 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 CPSF2Q9P2I0 782 aaKnown RBP14.15□□□□□ -0.14
PTPRN-202ENST00000409251 LRP5O75197 1615 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 YDJCA8MPS7 323 aa14.15□□□□□ -0.14
PTPRN-202ENST00000409251 CALRP27797 417 aaKnown RBP14.15□□□□□ -0.14
PTPRN-202ENST00000409251 SESN3P58005 492 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms