RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 C2orf54Q08AI8 447 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 KCNH2Q12809 1159 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 RRP1BQ14684 758 aaKnown RBP24.37■■□□□ 1.49
UPF3A-201ENST00000351487 FAM71BQ8TC56 605 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 CRACR2AQ9BSW2 395 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 PRR12Q9ULL5 1215 aa24.37■■□□□ 1.49
UPF3A-201ENST00000351487 A0A1W2PRG0 241 aa24.36■■□□□ 1.49
UPF3A-201ENST00000351487 MEIS1O00470 390 aa24.36■■□□□ 1.49
UPF3A-201ENST00000351487 PDXKO00764 312 aa24.36■■□□□ 1.49
UPF3A-201ENST00000351487 CC2D2BQ6DHV5 1058 aa24.36■■□□□ 1.49
UPF3A-201ENST00000351487 GPIHBP1Q8IV16 184 aa24.36■■□□□ 1.49
UPF3A-201ENST00000351487 RBBP6Q7Z6E9 1792 aaKnown RBP24.36■■□□□ 1.49
UPF3A-201ENST00000351487 HOXD13P35453 343 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 AARSP49588 968 aaKnown RBP eCLIP24.35■■□□□ 1.49
UPF3A-201ENST00000351487 SLC18A3Q16572 532 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 AOC3Q16853 763 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 CCDC70Q6NSX1 233 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 DRC1Q96MC2 740 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 CSRNP1Q96S65 589 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 HERC5Q9UII4 1024 aaKnown RBP24.35■■□□□ 1.49
UPF3A-201ENST00000351487 TSKSQ9UJT2 592 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 N4BP1O75113 896 aaKnown RBP24.35■■□□□ 1.49
UPF3A-201ENST00000351487 APBA3O96018 575 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 EPS15P42566 896 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 NFRKBQ6P4R8 1299 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 C7orf43Q8WVR3 580 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 TLR10Q9BXR5 811 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 PLCB1Q9NQ66 1216 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 HDAC9Q9UKV0 1011 aa24.35■■□□□ 1.49
UPF3A-201ENST00000351487 IGLV3-22A0A075B6J6 115 aa24.34■■□□□ 1.49
UPF3A-201ENST00000351487 HOXA13P31271 388 aaPredicted RBP24.34■■□□□ 1.49
UPF3A-201ENST00000351487 TRAF1Q13077 416 aa24.34■■□□□ 1.49
UPF3A-201ENST00000351487 KLHDC7AQ5VTJ3 777 aa24.34■■□□□ 1.49
UPF3A-201ENST00000351487 SPATA4Q8NEY3 305 aa24.34■■□□□ 1.49
UPF3A-201ENST00000351487 CNKSR1Q969H4 720 aa24.34■■□□□ 1.49
UPF3A-201ENST00000351487 PRMT6Q96LA8 375 aaPredicted RBP24.34■■□□□ 1.49
UPF3A-201ENST00000351487 ARMCX3Q9UH62 379 aaPredicted RBP24.34■■□□□ 1.49
UPF3A-201ENST00000351487 CALUO43852 315 aaPredicted RBP24.34■■□□□ 1.49
UPF3A-201ENST00000351487 EYA4O95677 639 aa24.34■■□□□ 1.49
UPF3A-201ENST00000351487 TAL1P17542 331 aaPredicted RBP24.34■■□□□ 1.49
UPF3A-201ENST00000351487 RAPGEF1Q13905 1077 aa24.34■■□□□ 1.49
UPF3A-201ENST00000351487 HSP90B2PQ58FF3 399 aa24.34■■□□□ 1.49
UPF3A-201ENST00000351487 DPY19L2P1Q6NXN4 242 aa24.34■■□□□ 1.49
UPF3A-201ENST00000351487 CCNI2Q6ZMN8 369 aaPredicted RBP24.34■■□□□ 1.49
UPF3A-201ENST00000351487 EIF2AK1Q9BQI3 630 aaKnown RBP24.34■■□□□ 1.49
UPF3A-201ENST00000351487 VPS18Q9P253 973 aa24.34■■□□□ 1.49
UPF3A-201ENST00000351487 STAT2P52630 851 aa24.33■■□□□ 1.49
UPF3A-201ENST00000351487 GYS2P54840 703 aa24.33■■□□□ 1.49
UPF3A-201ENST00000351487 ANKRD13CQ8N6S4 541 aa24.33■■□□□ 1.49
UPF3A-201ENST00000351487 TYW1Q9NV66 732 aaKnown RBP24.33■■□□□ 1.49
UPF3A-201ENST00000351487 APBA1Q02410 837 aa24.33■■□□□ 1.48
UPF3A-201ENST00000351487 NAB2Q15742 525 aa24.33■■□□□ 1.48
UPF3A-201ENST00000351487 CYP2W1Q8TAV3 490 aa24.33■■□□□ 1.48
UPF3A-201ENST00000351487 BHMT2Q9H2M3 363 aa24.33■■□□□ 1.48
UPF3A-201ENST00000351487 OLFML3Q9NRN5 406 aa24.33■■□□□ 1.48
UPF3A-201ENST00000351487 HPCAL4Q9UM19 191 aa24.33■■□□□ 1.48
UPF3A-201ENST00000351487 RABGAP1Q9Y3P9 1069 aa24.33■■□□□ 1.48
UPF3A-201ENST00000351487 MYBP10242 640 aa24.32■■□□□ 1.48
UPF3A-201ENST00000351487 CYP4A11Q02928 519 aa24.32■■□□□ 1.48
UPF3A-201ENST00000351487 ASIC2Q16515 512 aa24.32■■□□□ 1.48
UPF3A-201ENST00000351487 TBC1D5Q92609 795 aa24.32■■□□□ 1.48
UPF3A-201ENST00000351487 RUSC1Q9BVN2 902 aa24.32■■□□□ 1.48
UPF3A-201ENST00000351487 FAN1Q9Y2M0 1017 aa24.32■■□□□ 1.48
UPF3A-201ENST00000351487 ASTN1O14525 1302 aa24.32■■□□□ 1.48
UPF3A-201ENST00000351487 ZC3H4Q9UPT8 1303 aaKnown RBP24.32■■□□□ 1.48
UPF3A-201ENST00000351487 EML1O00423 815 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 SLC16A3O15427 465 aaKnown RBP24.31■■□□□ 1.48
UPF3A-201ENST00000351487 AFPP02771 609 aaKnown RBP24.31■■□□□ 1.48
UPF3A-201ENST00000351487 ZNF76P36508 570 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 KLHL30Q0D2K2 578 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 FAM133AQ8N9E0 248 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 CCDC102AQ96A19 550 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 ARHGEF10LQ9HCE6 1279 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 ZNF219Q9P2Y4 722 aaPredicted RBP24.31■■□□□ 1.48
UPF3A-201ENST00000351487 RNF14Q9UBS8 474 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 BUB1O43683 1085 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 TBCAO75347 108 aaKnown RBP24.31■■□□□ 1.48
UPF3A-201ENST00000351487 PRPF6O94906 941 aaKnown RBP24.31■■□□□ 1.48
UPF3A-201ENST00000351487 MYBL2P10244 700 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 SPICE1Q8N0Z3 855 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 METTL14Q9HCE5 456 aaKnown RBP24.31■■□□□ 1.48
UPF3A-201ENST00000351487 TUFT1Q9NNX1 390 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 PCDHGC5Q9Y5F6 944 aa24.31■■□□□ 1.48
UPF3A-201ENST00000351487 A0A087X0T9 212 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 YDJCA8MPS7 323 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 RSPH10B2B2RC85 870 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 ZMYND10O75800 440 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 FAM228BP0C875 321 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 RSPH10BP0C881 870 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 XRCC5P13010 732 aaKnown RBP24.3■■□□□ 1.48
UPF3A-201ENST00000351487 GAP43P17677 238 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 CHRNA5P30532 468 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 TNNT3P45378 269 aaPredicted RBP24.3■■□□□ 1.48
UPF3A-201ENST00000351487 SLC15A2Q16348 729 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 CCDC181Q5TID7 509 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 SUPT20HQ8NEM7 779 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 AENQ8WTP8 325 aaKnown RBP24.3■■□□□ 1.48
UPF3A-201ENST00000351487 HSD17B14Q9BPX1 270 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 SELENOOQ9BVL4 669 aa24.3■■□□□ 1.48
UPF3A-201ENST00000351487 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.3■■□□□ 1.481e-6■■■□□ 14.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms