RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 ASCC2Q9H1I8 757 aaPredicted RBP18.65■□□□□ 0.58
CPSF4-201ENST00000292476 PXMP2Q9NR77 195 aa18.65■□□□□ 0.58
CPSF4-201ENST00000292476 BMP2KQ9NSY1 1161 aaPredicted RBP18.65■□□□□ 0.58
CPSF4-201ENST00000292476 SLC45A1Q9Y2W3 748 aa18.65■□□□□ 0.58
CPSF4-201ENST00000292476 RIPK3Q9Y572 518 aa18.65■□□□□ 0.58
CPSF4-201ENST00000292476 SMCHD1A6NHR9 2005 aa18.65■□□□□ 0.58
CPSF4-201ENST00000292476 TEX33O43247 280 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 GAS7O60861 476 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 RPA1P27694 616 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 CCND2P30279 289 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 HERVK_113P62684 666 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 PPP2R5CQ13362 524 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 TUBB2AQ13885 445 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 PGM5Q15124 567 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 TOGARAM2Q6ZUX3 1019 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 RAD54LQ92698 747 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 TAAR1Q96RJ0 339 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 PLIN2Q99541 437 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 TUBB2BQ9BVA1 445 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 JADE2Q9NQC1 790 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 COL20A1Q9P218 1284 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 UBIAD1Q9Y5Z9 338 aa18.64■□□□□ 0.57
CPSF4-201ENST00000292476 TADA3O75528 432 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 STX17P56962 302 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 SPIRE1Q08AE8 756 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 CRHR2Q13324 411 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 MOGSQ13724 837 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 NCAPH2Q6IBW4 605 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 SLC30A10Q6XR72 485 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 DNERQ8NFT8 737 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 CYP2W1Q8TAV3 490 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 PNMA5Q96PV4 448 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 PDCD2LQ9BRP1 358 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 POLR3CQ9BUI4 534 aaPredicted RBP18.63■□□□□ 0.57
CPSF4-201ENST00000292476 TEKT3Q9BXF9 490 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 ARGLU1Q9NWB6 273 aaPredicted RBP18.63■□□□□ 0.57
CPSF4-201ENST00000292476 CYP39A1Q9NYL5 469 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 B4DLN1 442 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 IPO5O00410 1097 aaKnown RBP18.63■□□□□ 0.57
CPSF4-201ENST00000292476 PSMD10O75832 226 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 URI1O94763 535 aaPredicted RBP18.63■□□□□ 0.57
CPSF4-201ENST00000292476 CASP1P29466 404 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 UBXN2AP68543 259 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 RBL2Q08999 1139 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 KRT31Q15323 416 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 TAF1CQ15572 869 aaPredicted RBP18.63■□□□□ 0.57
CPSF4-201ENST00000292476 CNNM4Q6P4Q7 775 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 OTOP1Q7RTM1 612 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 NLRX1Q86UT6 975 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 NOC3LQ8WTT2 800 aaKnown RBP18.63■□□□□ 0.57
CPSF4-201ENST00000292476 NELFBQ8WX92 580 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 UBXN4Q92575 508 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 STAMQ92783 540 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 CDHR1Q96JP9 859 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 IWS1Q96ST2 819 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 TRIM9Q9C026 710 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 SPATC1LQ9H0A9 340 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 BLZF1Q9H2G9 400 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 TBC1D22BQ9NU19 505 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 TCEAL9Q9UHQ7 104 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 VAV3Q9UKW4 847 aa18.63■□□□□ 0.57
CPSF4-201ENST00000292476 PVALEFA0A1B0GWK0 134 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 ZSCAN20P17040 1043 aaPredicted RBP18.62■□□□□ 0.57
CPSF4-201ENST00000292476 EIF2AK2P19525 551 aaKnown RBP18.62■□□□□ 0.57
CPSF4-201ENST00000292476 COPB1P53618 953 aaKnown RBP18.62■□□□□ 0.57
CPSF4-201ENST00000292476 GNG11P61952 73 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 GABPB1Q06547 395 aaPredicted RBP18.62■□□□□ 0.57
CPSF4-201ENST00000292476 DMTNQ08495 405 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 STIM1Q13586 685 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 MTMR1Q13613 665 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 ERCC6LQ2NKX8 1250 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 TCP11X2Q5H9J9 407 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 TMTC1Q8IUR5 882 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 SMYD4Q8IYR2 804 aaPredicted RBP18.62■□□□□ 0.57
CPSF4-201ENST00000292476 KRT222Q8N1A0 295 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 ANKRD35Q8N283 1001 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 NEK9Q8TD19 979 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 MPHOSPH6Q99547 160 aaKnown RBP18.62■□□□□ 0.57
CPSF4-201ENST00000292476 TUFT1Q9NNX1 390 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 ADGRG1Q9Y653 693 aa18.62■□□□□ 0.57
CPSF4-201ENST00000292476 COL11A1P12107 1806 aaPredicted RBP18.61■□□□□ 0.57
CPSF4-201ENST00000292476 GPR25O00155 361 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 FANCGO15287 622 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 RHOBTB3O94955 611 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 ITGB5P18084 799 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 VSIG10LQ86VR7 867 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 ADSSL1Q8N142 457 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 ZNF296Q8WUU4 475 aaPredicted RBP18.61■□□□□ 0.57
CPSF4-201ENST00000292476 GPRASP2Q96D09 838 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 CFHR5Q9BXR6 569 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 A1CFQ9NQ94 594 aaKnown RBP18.61■□□□□ 0.57
CPSF4-201ENST00000292476 KCNH7Q9NS40 1196 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 BLOC1S4Q9NUP1 217 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.61■□□□□ 0.57
CPSF4-201ENST00000292476 KIAA1024Q9UPX6 916 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 DNM3Q9UQ16 869 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 MRFAP1Q9Y605 127 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 V9GYY5 206 aaPredicted RBP18.61■□□□□ 0.57
CPSF4-201ENST00000292476 A0A0G2JMZ2 1700 aa18.61■□□□□ 0.57
CPSF4-201ENST00000292476 SPDYE4A6NLX3 237 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms