RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	MER1	P16523	270 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	MSB1	P21339	1137 aa	Known RBP	10.13	□□□□□ -0.79
VPS60	YDR486C	DMC1	P25453	334 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	IMG1	P25626	169 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	BUD14	P27637	709 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	NTG1	P31378	399 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	CDC12	P32468	407 aa	Known RBP	10.13	□□□□□ -0.79
VPS60	YDR486C	SWH1	P35845	1188 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	YRO2	P38079	344 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	SLM4	P38247	162 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	YHL012W	P38709	493 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	ALK1	P43633	760 aa	Known RBP	10.13	□□□□□ -0.79
VPS60	YDR486C	YOR342C	Q12182	319 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	TAF3	Q12297	353 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	YDL199C	Q12407	687 aa		10.13	□□□□□ -0.79
VPS60	YDR486C	TIM9	O74700	87 aa		10.12	□□□□□ -0.79
VPS60	YDR486C	SUI3	P09064	285 aa	Known RBP	10.12	□□□□□ -0.79
VPS60	YDR486C	YCR006C	P25350	157 aa		10.12	□□□□□ -0.79
VPS60	YDR486C	YMC1	P32331	307 aa		10.12	□□□□□ -0.79
VPS60	YDR486C	CDC3	P32457	520 aa	Known RBP	10.12	□□□□□ -0.79
VPS60	YDR486C	ATG14	P38270	344 aa		10.12	□□□□□ -0.79
VPS60	YDR486C	TED1	P40533	473 aa		10.12	□□□□□ -0.79
VPS60	YDR486C	SNL1	P40548	159 aa		10.12	□□□□□ -0.79
VPS60	YDR486C	AGP3	P43548	558 aa		10.12	□□□□□ -0.79
VPS60	YDR486C	DUG1	P43616	481 aa	Known RBP	10.12	□□□□□ -0.79
VPS60	YDR486C	CDH1	P53197	566 aa		10.12	□□□□□ -0.79
VPS60	YDR486C	REC102	Q02721	264 aa		10.12	□□□□□ -0.79
VPS60	YDR486C	PUT2	P07275	575 aa		10.11	□□□□□ -0.79
VPS60	YDR486C	ARE1	P25628	610 aa		10.11	□□□□□ -0.79
VPS60	YDR486C	MKK1	P32490	508 aa		10.11	□□□□□ -0.79
VPS60	YDR486C	LHP1	P33399	275 aa	Known RBP	10.11	□□□□□ -0.79
VPS60	YDR486C	PET112	P33893	541 aa		10.11	□□□□□ -0.79
VPS60	YDR486C	YBR238C	P38330	731 aa	Known RBP	10.11	□□□□□ -0.79
VPS60	YDR486C	ELP2	P42935	788 aa		10.11	□□□□□ -0.79
VPS60	YDR486C	ATF2	P53296	535 aa		10.11	□□□□□ -0.79
VPS60	YDR486C	YMR310C	Q04867	317 aa	Predicted RBP	10.11	□□□□□ -0.79
VPS60	YDR486C	YOL036W	Q08206	761 aa		10.11	□□□□□ -0.79
VPS60	YDR486C	MCA1	Q08601	432 aa		10.11	□□□□□ -0.79
VPS60	YDR486C	YOL159C-A	Q3E769	90 aa		10.11	□□□□□ -0.79
VPS60	YDR486C	HTS1	P07263	546 aa	Known RBP	10.1	□□□□□ -0.79
VPS60	YDR486C	RPS1B	P23248	255 aa	Known RBP	10.1	□□□□□ -0.79
VPS60	YDR486C	MDJ1	P35191	511 aa		10.1	□□□□□ -0.79
VPS60	YDR486C	SPC34	P36131	295 aa		10.1	□□□□□ -0.79
VPS60	YDR486C	ZTA1	P38230	334 aa	Known RBP	10.1	□□□□□ -0.79
VPS60	YDR486C	PRP39	P39682	629 aa	Known RBP	10.1	□□□□□ -0.79
VPS60	YDR486C	MPM1	P40364	252 aa		10.1	□□□□□ -0.79
VPS60	YDR486C	MRPS18	P42847	217 aa		10.1	□□□□□ -0.79
VPS60	YDR486C	STE24	P47154	453 aa		10.1	□□□□□ -0.79
VPS60	YDR486C	HOS2	P53096	452 aa	Predicted RBP	10.1	□□□□□ -0.79
VPS60	YDR486C	YGR079W	P53249	370 aa		10.1	□□□□□ -0.79
VPS60	YDR486C	ATG38	Q05789	226 aa	Known RBP	10.1	□□□□□ -0.79
VPS60	YDR486C	SPO77	Q06134	477 aa		10.1	□□□□□ -0.79
VPS60	YDR486C	RRT8	Q08219	342 aa		10.1	□□□□□ -0.79
VPS60	YDR486C	YDR061W	Q12298	539 aa		10.1	□□□□□ -0.79
VPS60	YDR486C	SKS1	Q12505	502 aa		10.1	□□□□□ -0.79
VPS60	YDR486C	CLB3	P24870	427 aa		10.09	□□□□□ -0.79
VPS60	YDR486C	YIM1	P28625	365 aa		10.09	□□□□□ -0.79
VPS60	YDR486C	UBC9	P50623	157 aa	Predicted RBP	10.09	□□□□□ -0.79
VPS60	YDR486C	ERG13	P54839	491 aa	Known RBP	10.09	□□□□□ -0.79
VPS60	YDR486C	NAM8	Q00539	523 aa	Known RBP	10.09	□□□□□ -0.79
VPS60	YDR486C	YDR239C	Q03780	787 aa		10.09	□□□□□ -0.79
VPS60	YDR486C	DBP9	Q06218	594 aa	Known RBP	10.09	□□□□□ -0.79
VPS60	YDR486C	NDL1	Q06568	189 aa		10.09	□□□□□ -0.79
VPS60	YDR486C	REH1	Q06709	432 aa		10.09	□□□□□ -0.79
VPS60	YDR486C	YTM1	Q12024	460 aa	Predicted RBP	10.09	□□□□□ -0.79
VPS60	YDR486C	BSC1	Q12140	328 aa		10.09	□□□□□ -0.79
VPS60	YDR486C	YOR019W	Q99248	730 aa		10.09	□□□□□ -0.79
VPS60	YDR486C	MF(ALPHA)1	P01149	165 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	GAL4	P04386	881 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	ZWF1	P11412	505 aa	Known RBP	10.08	□□□□□ -0.8
VPS60	YDR486C	ATR1	P13090	542 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	YJU2	P28320	278 aa	Predicted RBP	10.08	□□□□□ -0.8
VPS60	YDR486C	APE2	P32454	952 aa	Known RBP	10.08	□□□□□ -0.8
VPS60	YDR486C	PEP12	P32854	288 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	TUL1	P36096	758 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	YJL068C	P40363	299 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	YIL086C	P40503	102 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	YNL181W	P53878	407 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	SIZ1	Q04195	904 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	DCI1	Q08558	271 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	PUS7	Q08647	676 aa	Known RBP	10.08	□□□□□ -0.8
VPS60	YDR486C	YKL033W-A	Q86ZR7	236 aa		10.08	□□□□□ -0.8
VPS60	YDR486C	FBA1	P14540	359 aa	Known RBP	10.07	□□□□□ -0.8
VPS60	YDR486C	RPB5	P20434	215 aa		10.07	□□□□□ -0.8
VPS60	YDR486C	CLB4	P24871	460 aa		10.07	□□□□□ -0.8
VPS60	YDR486C	MRPL32	P25348	183 aa		10.07	□□□□□ -0.8
VPS60	YDR486C	MXR2	P25566	168 aa		10.07	□□□□□ -0.8
VPS60	YDR486C	AUR1	P36107	401 aa	Predicted RBP	10.07	□□□□□ -0.8
VPS60	YDR486C	MRPL15	P36523	253 aa		10.07	□□□□□ -0.8
VPS60	YDR486C	VMA10	P48836	114 aa	Known RBP	10.07	□□□□□ -0.8
VPS60	YDR486C	YGR012W	P53206	393 aa		10.07	□□□□□ -0.8
VPS60	YDR486C	RRN5	Q02983	363 aa		10.07	□□□□□ -0.8
VPS60	YDR486C	SWA2	Q06677	668 aa		10.07	□□□□□ -0.8
VPS60	YDR486C	YPR097W	Q06839	1073 aa		10.07	□□□□□ -0.8
VPS60	YDR486C	DTD1	Q07648	150 aa	Known RBP	10.07	□□□□□ -0.8
VPS60	YDR486C	ACC1	Q00955	2233 aa	Known RBP	10.06	□□□□□ -0.8
VPS60	YDR486C	GRR1	P24814	1151 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	POL4	P25615	582 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	UBC8	P28263	218 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	MSN2	P33748	704 aa		10.06	□□□□□ -0.8

Retrieved 100 of 5,963 RNA–protein pairs in 21.9 ms