RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	MRPL10	P36520	322 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	SPC97	P38863	823 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	LCP5	P40079	357 aa	Predicted RBP	4.1	□□□□□ -1.75
CDC9	YDL164C	TFG2	P41896	400 aa	Predicted RBP	4.1	□□□□□ -1.75
CDC9	YDL164C	YJL163C	P46996	555 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	YHC3	P47040	408 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	KAP114	P53067	1004 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	PKP2	P53170	491 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	BUD32	P53323	261 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	TRM112	P53738	135 aa	Predicted RBP	4.1	□□□□□ -1.75
CDC9	YDL164C	SKI8	Q02793	397 aa	Predicted RBP	4.1	□□□□□ -1.75
CDC9	YDL164C	YMR187C	Q03236	431 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	GPN3	Q06543	272 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	RKI1	Q12189	258 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	YCL012C	Q8J0M4	134 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	CDC21	P06785	304 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	IMA3	P0CW40	589 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	IMA4	P0CW41	589 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	RNR3	P21672	869 aa	Known RBP	4.09	□□□□□ -1.75
CDC9	YDL164C	TKL1	P23254	680 aa	Known RBP	4.09	□□□□□ -1.75
CDC9	YDL164C	RPS2	P25443	254 aa	Known RBP	4.09	□□□□□ -1.75
CDC9	YDL164C	PEX3	P28795	441 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	ICS2	P38284	255 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	SMF2	P38778	549 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	BIG1	P38813	335 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	UTP18	P40362	594 aa	Predicted RBP	4.09	□□□□□ -1.75
CDC9	YDL164C	STB4	P50104	949 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	YGR127W	P53275	312 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	RET3	P53600	189 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	YDR132C	Q03900	495 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	MRPL35	Q06678	367 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	YDL086W	Q07505	273 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	NSE1	Q07913	336 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	IMA2	Q08295	589 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	DNL4	Q08387	944 aa	Predicted RBP	4.09	□□□□□ -1.75
CDC9	YDL164C	RKM5	Q12367	367 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	LAG2	Q92325	660 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	UBA3	Q99344	299 aa		4.09	□□□□□ -1.75
CDC9	YDL164C	SUC2	P00724	532 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	CKA2	P19454	339 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	PTP1	P25044	335 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	MSS51	P32335	436 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	PTR2	P32901	601 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	RRN10	P38204	145 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	KAP104	P38217	918 aa	Known RBP	4.09	□□□□□ -1.76
CDC9	YDL164C	CIN4	P39110	191 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	YER130C	P39959	443 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	CGR1	P53188	120 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	YNL260C	P53846	198 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	NSG2	P53898	299 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	FMP30	Q02883	468 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	TRS23	Q03784	219 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	PLM2	Q04383	521 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	AIM33	Q04516	312 aa		4.09	□□□□□ -1.76
CDC9	YDL164C	YMR034C	Q05131	434 aa	Predicted RBP	4.09	□□□□□ -1.76
CDC9	YDL164C	XRN1	P22147	1528 aa	Known RBP	4.08	□□□□□ -1.76
CDC9	YDL164C	ERG11	P10614	530 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	YCR016W	P25617	290 aa	Known RBP	4.08	□□□□□ -1.76
CDC9	YDL164C	LST4	P34239	828 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	EFM2	P38347	419 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	TCD1	P38756	429 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	DSE1	P40077	573 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	FMC1	P40491	155 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	HXT9	P40885	567 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	SAD1	P43589	448 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	PTR3	P43606	678 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	HXT11	P54862	567 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	CDC14	Q00684	551 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	SPP2	Q02521	185 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	PIG1	Q06216	648 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	GRS2	Q06817	618 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	LOT6	Q07923	191 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	GET4	Q12125	312 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	SUT2	Q12286	268 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	SPP41	P38904	1435 aa		4.08	□□□□□ -1.76
CDC9	YDL164C	TRP4	P07285	380 aa	Predicted RBP	4.07	□□□□□ -1.76
CDC9	YDL164C	CDC23	P16522	626 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	RPO26	P20435	155 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	CKI1	P20485	582 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	ICL1	P28240	557 aa	Predicted RBP	4.07	□□□□□ -1.76
CDC9	YDL164C	RPC25	P35718	212 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	LHS1	P36016	881 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	AIM29	P36154	155 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	INM1	P38710	295 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	YFL040W	P43562	540 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	YJR011C	P47086	261 aa	Predicted RBP	4.07	□□□□□ -1.76
CDC9	YDL164C	AMA1	P50082	593 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	SPT20	P50875	604 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	CUS2	P53830	285 aa	Predicted RBP	4.07	□□□□□ -1.76
CDC9	YDL164C	SAM50	P53969	484 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	IZH1	Q03419	316 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	GIM5	Q04493	163 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	RRN11	Q04712	507 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	CDC123	Q05791	360 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	YLR224W	Q05947	369 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	YLR040C	Q07988	224 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	YLR122C	Q12312	125 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	LAM4	P38800	1345 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	RHO2	P06781	192 aa		4.07	□□□□□ -1.76
CDC9	YDL164C	SAR1	P20606	190 aa	Known RBP	4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 24.7 ms