RNA–Protein interactions for RNA: YDL139C

SCM3, Transcript of Nonhistone component of centromeric chromatin, yeast

Gene SCM3, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SCM3	YDL139C	NAG1	Q8TGN9	163 aa		4.9	□□□□□ -1.63
SCM3	YDL139C	TIM9	O74700	87 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	RHO1	P06780	209 aa	Known RBP	4.89	□□□□□ -1.63
SCM3	YDL139C	UBA1	P22515	1024 aa	Known RBP	4.89	□□□□□ -1.63
SCM3	YDL139C	MNE1	P24720	663 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	PTP2	P29461	750 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	SIN4	P32259	974 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	PRP18	P33411	251 aa	Predicted RBP	4.89	□□□□□ -1.63
SCM3	YDL139C	TIP20	P33891	701 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	SWH1	P35845	1188 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	CAF4	P36130	643 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	SKG1	P36169	355 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	YHR033W	P38690	423 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	MTW1	P39731	289 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	FRT2	P39734	528 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	LSM5	P40089	93 aa	Known RBP	4.89	□□□□□ -1.63
SCM3	YDL139C	PET130	P47065	347 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	NOP19	P53317	196 aa	Predicted RBP	4.89	□□□□□ -1.63
SCM3	YDL139C	HOL1	P53389	586 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	TOF2	Q02208	771 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	MET31	Q03081	177 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	MSC1	Q03104	513 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	NSE5	Q03718	556 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	YDR109C	Q04585	715 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	BCP1	Q06338	283 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	YDL073W	Q07454	984 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	POM34	Q12445	299 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	SNF8	Q12483	233 aa		4.89	□□□□□ -1.63
SCM3	YDL139C	SPS19	P32573	292 aa	Known RBP	4.88	□□□□□ -1.63
SCM3	YDL139C	SEC17	P32602	292 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	MTC7	P32633	139 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	IML3	P38265	245 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	DBP8	P38719	431 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
SCM3	YDL139C	SEC28	P40509	296 aa	Known RBP	4.88	□□□□□ -1.63
SCM3	YDL139C	GCD10	P41814	478 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	IME4	P41833	600 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	FMP32	P43557	207 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	SIP4	P46954	829 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	GCD14	P46959	383 aa	Predicted RBP	4.88	□□□□□ -1.63
SCM3	YDL139C	YJL163C	P46996	555 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	FMP33	P46998	180 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	PYK2	P52489	506 aa	Known RBP	4.88	□□□□□ -1.63
SCM3	YDL139C	UBC11	P52492	156 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	GET1	P53192	235 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	EFM5	P53200	248 aa	Known RBP	4.88	□□□□□ -1.63
SCM3	YDL139C	SWC4	P53201	476 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	ARE2	P53629	642 aa	Known RBP	4.88	□□□□□ -1.63
SCM3	YDL139C	YNL058C	P53947	316 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	EFM6	P53970	246 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	PRP38	Q00723	242 aa	Predicted RBP	4.88	□□□□□ -1.63
SCM3	YDL139C	PPN1	Q04119	674 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	HSP31	Q04432	237 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	RRP45	Q05636	305 aa	Known RBP	4.88	□□□□□ -1.63
SCM3	YDL139C	MLC2	Q06580	163 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	YOL073C	Q08232	322 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	DBP10	Q12389	995 aa	Known RBP	4.88	□□□□□ -1.63
SCM3	YDL139C	YOR338W	Q99326	363 aa		4.88	□□□□□ -1.63
SCM3	YDL139C	CYR1	P08678	2026 aa	Known RBP	4.87	□□□□□ -1.63
SCM3	YDL139C	SNF4	P12904	322 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	NMT1	P14743	455 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	DAP2	P18962	818 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	BET2	P20133	325 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	SGV1	P23293	657 aa	Known RBP	4.87	□□□□□ -1.63
SCM3	YDL139C	CTR86	P25355	563 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	TRX3	P25372	127 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	PRE4	P30657	266 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	TFC1	P32367	649 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	MGM101	P32787	269 aa	Known RBP	4.87	□□□□□ -1.63
SCM3	YDL139C	YME2	P32843	850 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	HIS7	P33734	552 aa	Known RBP	4.87	□□□□□ -1.63
SCM3	YDL139C	FRE2	P36033	711 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	GMH1	P36125	273 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	IST2	P38250	946 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	CYC2	P38909	366 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	YIL077C	P40508	320 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	ILM1	P47155	203 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	RMR1	P53060	241 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	ERG26	P53199	349 aa	Known RBP	4.87	□□□□□ -1.63
SCM3	YDL139C	SHY1	P53266	389 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	FHN1	P53279	174 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	DCP2	P53550	970 aa	Known RBP	4.87	□□□□□ -1.63
SCM3	YDL139C	YMR010W	Q03687	405 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	SPC2	Q04969	178 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	TRM8	Q12009	286 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	RTK1	Q12100	620 aa	Predicted RBP	4.87	□□□□□ -1.63
SCM3	YDL139C	TAD3	Q9URQ3	322 aa		4.87	□□□□□ -1.63
SCM3	YDL139C	CBS2	P14905	389 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	MET8	P15807	274 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	FPR1	P20081	114 aa	Known RBP	4.86	□□□□□ -1.63
SCM3	YDL139C	EPT1	P22140	391 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	FEN2	P25621	512 aa	Known RBP	4.86	□□□□□ -1.63
SCM3	YDL139C	ATO2	P32907	282 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	RPS1A	P33442	255 aa	Known RBP	4.86	□□□□□ -1.63
SCM3	YDL139C	CDS1	P38221	457 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	FTH1	P38310	465 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	YHR218W	P38899	603 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	MMF1	P40185	145 aa	Known RBP	4.86	□□□□□ -1.63
SCM3	YDL139C	YIL001W	P40560	513 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	FLC3	P53121	802 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 23.1 ms