RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CDC37Q16543 378 aaPredicted RBP14.06□□□□□ -0.16
LINC00540-203ENST00000631321 Q4G0T1 1027 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 CCDC181Q5TID7 509 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 DPY19L2P1Q6NXN4 242 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 ANKRD13CQ8N6S4 541 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 MRIQ9BWK5 157 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 STIM2Q9P246 746 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 PCDHGC5Q9Y5F6 944 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 A0A0U1RQG5 324 aaPredicted RBP14.06□□□□□ -0.16
LINC00540-203ENST00000631321 BTNL10A8MVZ5 291 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 CETN3O15182 167 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 ADAM9Q13443 819 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 EMBQ6PCB8 327 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 GOLGA6L1Q8N7Z2 621 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 ZBTB9Q96C00 473 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 ZDHHC15Q96MV8 337 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 KANSL2Q9H9L4 492 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 TRAF3IP3Q9Y228 551 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 STK24Q9Y6E0 443 aa14.06□□□□□ -0.16
LINC00540-203ENST00000631321 GOLGA6BA6NDN3 693 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 EEF2P13639 858 aaKnown RBP14.05□□□□□ -0.16
LINC00540-203ENST00000631321 EPHB4P54760 987 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 ARHGAP4P98171 946 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 CFAP221Q4G0U5 840 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 SLFN13Q68D06 897 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 EPM2AIP1Q7L775 607 aaPredicted RBP14.05□□□□□ -0.16
LINC00540-203ENST00000631321 FRMD5Q7Z6J6 570 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 GPIHBP1Q8IV16 184 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 ZFPM1Q8IX07 1006 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 CAVIN3Q969G5 261 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 GDAP1L1Q96MZ0 367 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 SH3GL2Q99962 352 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 PLCB1Q9NQ66 1216 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 ARFGEF1Q9Y6D6 1849 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 BUB1O43683 1085 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 CLSTN1O94985 981 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 CXCR5P32302 372 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 STAT3P40763 770 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 CRKP46108 304 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 MMP14P50281 582 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 IRX5P78411 483 aaPredicted RBP14.05□□□□□ -0.16
LINC00540-203ENST00000631321 NNTQ13423 1086 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 GIT2Q14161 759 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 LRRC31Q6UY01 552 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 SND1Q7KZF4 910 aaKnown RBP eCLIP14.05□□□□□ -0.16
LINC00540-203ENST00000631321 CATSPER3Q86XQ3 398 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 SYT2Q8N9I0 419 aaPredicted RBP14.05□□□□□ -0.16
LINC00540-203ENST00000631321 TBC1D5Q92609 795 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 LENG9Q96B70 501 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 P2RX7Q99572 595 aaKnown RBP14.05□□□□□ -0.16
LINC00540-203ENST00000631321 SMARCAL1Q9NZC9 954 aa14.05□□□□□ -0.16
LINC00540-203ENST00000631321 GRID2IPA4D2P6 1211 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 POTEFA5A3E0 1075 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 SHOX2O60902 331 aaPredicted RBP14.04□□□□□ -0.16
LINC00540-203ENST00000631321 POTEIP0CG38 1075 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 SPATA31C1P0DKV0 1188 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 NPR1P16066 1061 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 RPA1P27694 616 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 CACNB1Q02641 598 aaPredicted RBP14.04□□□□□ -0.16
LINC00540-203ENST00000631321 KCNH2Q12809 1159 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 DOK7Q18PE1 504 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 POTEGQ6S5H5 508 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 POTEEQ6S8J3 1075 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 SIAH1Q8IUQ4 282 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 ERMNQ8TAM6 284 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 RIN2Q8WYP3 895 aaPredicted RBP14.04□□□□□ -0.16
LINC00540-203ENST00000631321 TSPYL1Q9H0U9 437 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 RBM12Q9NTZ6 932 aaKnown RBP14.04□□□□□ -0.16
LINC00540-203ENST00000631321 EHD2Q9NZN4 543 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 ATAD5Q96QE3 1844 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 NPM3O75607 178 aaKnown RBP14.04□□□□□ -0.16
LINC00540-203ENST00000631321 PALMO75781 387 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 SLURP2P0DP57 97 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 KLHL30Q0D2K2 578 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 ASIC2Q16515 512 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 BMT2Q1RMZ1 405 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 C10orf76Q5T2E6 689 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 MEI1Q5TIA1 1274 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 TATDN1Q6P1N9 297 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 SEPT12Q8IYM1 358 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 FAM20AQ96MK3 541 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 PSMB7Q99436 277 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 IDI2Q9BXS1 227 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 MYH4Q9Y623 1939 aa14.04□□□□□ -0.16
LINC00540-203ENST00000631321 A0A087X0T9 212 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 FOSP01100 380 aaPredicted RBP14.03□□□□□ -0.16
LINC00540-203ENST00000631321 KRT18P05783 430 aaKnown RBP14.03□□□□□ -0.16
LINC00540-203ENST00000631321 FAM228BP0C875 321 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 EPB41P11171 864 aaKnown RBP14.03□□□□□ -0.16
LINC00540-203ENST00000631321 NR2F2P24468 414 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 KLRC1P26715 233 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 CIITAP33076 1130 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 SREBF1P36956 1147 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 CASP5P51878 434 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 APBA1Q02410 837 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 RAPGEF1Q13905 1077 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 KNOP1Q1ED39 458 aaKnown RBP14.03□□□□□ -0.16
LINC00540-203ENST00000631321 CERKLQ49MI3 558 aaPredicted RBP14.03□□□□□ -0.16
LINC00540-203ENST00000631321 ALS2CLQ60I27 953 aa14.03□□□□□ -0.16
LINC00540-203ENST00000631321 C8orf74Q6P047 294 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms