RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	SLIT1	O75093	1534 aa		12.43	□□□□□ -0.42
CLN3-238	ENST00000569430	TTI1	O43156	1089 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	RPS8	P62241	208 aa	Known RBP	12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	GALNT17	Q6IS24	598 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	TTI2	Q6NXR4	508 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	UNC13D	Q70J99	1090 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	SUGP1	Q8IWZ8	645 aa	Known RBP	12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	MTMR8	Q96EF0	704 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	CELF4	Q9BZC1	486 aa	Known RBP	12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	PNMA2	Q9UL42	364 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	OVOS2	A0A0G2JMS6	1433 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	EXOC3	O60645	756 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	ACSL3	O95573	720 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	KRT15	P19012	456 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	DR1	Q01658	176 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	PKN1	Q16512	942 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	TTMP	Q5BVD1	217 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	MEX3C	Q5U5Q3	659 aa	Known RBP	12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	AEN	Q8WTP8	325 aa	Known RBP	12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	CHMP6	Q96FZ7	201 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	LZTS2	Q9BRK4	669 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	ZBTB21	Q9ULJ3	1066 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	XRN1	Q8IZH2	1706 aa	Known RBP	12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	LTN1	O94822	1766 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	CSF1R	P07333	972 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	VEGFA	P15692	232 aa	Predicted RBP	12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	GBP1	P32455	592 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	UBE2S	Q16763	222 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	CYB5D1	Q6P9G0	228 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	ARMC9	Q7Z3E5	817 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	YIPF3	Q9GZM5	350 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	CEP72	Q9P209	647 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	HDAC9	Q9UKV0	1011 aa		12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	NOC2L	Q9Y3T9	749 aa	Known RBP	12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	FAM208A	Q9UK61	1670 aa	Known RBP	12.42	□□□□□ -0.42
CLN3-238	ENST00000569430	LRRC10B	A6NIK2	292 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	RASGRF2	O14827	1237 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	SKAP2	O75563	359 aa	Predicted RBP	12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	RCAN1	P53805	252 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	MXRA7	P84157	204 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	SNX1	Q13596	522 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	UAP1	Q16222	522 aa	Predicted RBP	12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	ZNF365	Q70YC5	407 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	TRIM51	Q9BSJ1	452 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	NT5C3A	Q9H0P0	336 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	DCP1A	Q9NPI6	582 aa	Predicted RBP	12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	SPATS2L	Q9NUQ6	558 aa	Known RBP	12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	CCDC87	Q9NVE4	849 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	FOXP2	O15409	715 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	MYCN	P04198	464 aa	Predicted RBP	12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	HSD17B3	P37058	310 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	KCNH2	Q12809	1159 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	PRR16	Q569H4	304 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	UBXN6	Q9BZV1	441 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	AZI2	Q9H6S1	392 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	CNOT10	Q9H9A5	744 aa	Known RBP	12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	STK17A	Q9UEE5	414 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	NALCN	Q8IZF0	1738 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430		H0Y3Z8	333 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	PRPF6	O94906	941 aa	Known RBP	12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	PC	P11498	1178 aa	Known RBP	12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	ACTN1	P12814	892 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	TRIP13	Q15645	432 aa	Predicted RBP	12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	USH1G	Q495M9	461 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	KDM7A	Q6ZMT4	941 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	KAT2B	Q92831	832 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430	CCSER1	Q9C0I3	900 aa		12.41	□□□□□ -0.42
CLN3-238	ENST00000569430		A0A087X0T9	212 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	FAM228B	P0C875	321 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	ATP5D	P30049	168 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	COPB2	P35606	906 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	SLC16A2	P36021	539 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	TRIM28	Q13263	835 aa	Known RBP	12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	TAF11	Q15544	211 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	CDC37	Q16543	378 aa	Predicted RBP	12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	SGSM3	Q96HU1	749 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	FER1L4	A9Z1Z3	1794 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	MYMK	A6NI61	221 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430		E9PMD0	336 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	AFP	P02771	609 aa	Known RBP	12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	PBX1	P40424	430 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	AP1AR	Q63HQ0	302 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	SH3RF1	Q7Z6J0	888 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	PACSIN1	Q9BY11	444 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	PSTPIP2	Q9H939	334 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	GCNT4	Q9P109	453 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	PCDHA6	Q9UN73	950 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	PCDHA8	Q9Y5H6	950 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	SFI1	A8K8P3	1242 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	CCDC188	H7C350	402 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	THAP12	O43422	761 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	TDP2	O95551	362 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	POTEJ	P0CG39	1038 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	CCDC174	Q6PII3	467 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	FAM47E	Q6ZV65	393 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	SLF2	Q8IX21	1173 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	GUF1	Q8N442	669 aa	Known RBP	12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	ERGIC2	Q96RQ1	377 aa		12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	LBHD1	Q9BQE6	289 aa	Predicted RBP	12.4	□□□□□ -0.42
CLN3-238	ENST00000569430	MTA3	Q9BTC8	594 aa		12.4	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 72 ms