RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 NECAB1Q8N987 351 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 CCDC148Q8NFR7 591 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 SCLYQ96I15 445 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 IL23AQ9NPF7 189 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 NOD1Q9Y239 953 aa17.15■□□□□ 0.34
VPS39-210ENST00000568357 EDIL3O43854 480 aa17.14■□□□□ 0.33
VPS39-210ENST00000568357 LARGE1O95461 756 aa17.14■□□□□ 0.33
VPS39-210ENST00000568357 ZNF76P36508 570 aa17.14■□□□□ 0.33
VPS39-210ENST00000568357 NLRP5P59047 1200 aa17.14■□□□□ 0.33
VPS39-210ENST00000568357 MCTP2Q6DN12 878 aa17.14■□□□□ 0.33
VPS39-210ENST00000568357 TRIM50Q86XT4 487 aa17.14■□□□□ 0.33
VPS39-210ENST00000568357 BICD2Q8TD16 824 aa17.14■□□□□ 0.33
VPS39-210ENST00000568357 RNPC3Q96LT9 517 aaKnown RBP17.14■□□□□ 0.33
VPS39-210ENST00000568357 AGO4Q9HCK5 861 aaKnown RBP17.14■□□□□ 0.33
VPS39-210ENST00000568357 IGLV3-22A0A075B6J6 115 aa17.13■□□□□ 0.33
VPS39-210ENST00000568357 TCF7P36402 384 aaPredicted RBP17.13■□□□□ 0.33
VPS39-210ENST00000568357 ITGB3BPQ13352 177 aaPredicted RBP17.13■□□□□ 0.33
VPS39-210ENST00000568357 SEPT1Q8WYJ6 367 aa17.13■□□□□ 0.33
VPS39-210ENST00000568357 DHX38Q92620 1227 aaKnown RBP17.13■□□□□ 0.33
VPS39-210ENST00000568357 UIMC1Q96RL1 719 aa17.13■□□□□ 0.33
VPS39-210ENST00000568357 KIF2CQ99661 725 aa17.13■□□□□ 0.33
VPS39-210ENST00000568357 RNPEPQ9H4A4 650 aa17.13■□□□□ 0.33
VPS39-210ENST00000568357 PCDHA4Q9UN74 947 aa17.13■□□□□ 0.33
VPS39-210ENST00000568357 PITPNM1O00562 1244 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 CDKL5O76039 1030 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 IQCF3P0C7M6 154 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 SMIM10L2AP0DMW4 78 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 SMIM10L2BP0DMW5 78 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 HOXD11P31277 338 aaPredicted RBP17.12■□□□□ 0.33
VPS39-210ENST00000568357 BFSP2Q13515 415 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 NPY5RQ15761 445 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 RASIP1Q5U651 963 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 NIPA1Q7RTP0 329 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 PLA2G4DQ86XP0 818 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 RETREG2Q8NC44 543 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 WNT8BQ93098 351 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 JPH1Q9HDC5 661 aaPredicted RBP17.12■□□□□ 0.33
VPS39-210ENST00000568357 SLC9A2Q9UBY0 812 aa17.12■□□□□ 0.33
VPS39-210ENST00000568357 MYH7BA7E2Y1 1941 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 RBAK-RBAKDNI3L0D1 243 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 M0R2N6 131 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 DHX15O43143 795 aaKnown RBP17.11■□□□□ 0.33
VPS39-210ENST00000568357 FGBP02675 491 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 FDPSP14324 419 aaKnown RBP17.11■□□□□ 0.33
VPS39-210ENST00000568357 HOXC8P31273 242 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 GTF3C6Q969F1 213 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 PCYT2Q99447 389 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 SDF4Q9BRK5 362 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 GJB4Q9NTQ9 266 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 SETD4Q9NVD3 440 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 KCNJ14Q9UNX9 436 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 NFASCO94856 1347 aa17.11■□□□□ 0.33
VPS39-210ENST00000568357 C17orf102A2RUQ5 167 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 CCNE2O96020 404 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 CIITAP33076 1130 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 ACTR2P61160 394 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 PTK7Q13308 1070 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 GPNMBQ14956 572 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 TRIM71Q2Q1W2 868 aaKnown RBP17.1■□□□□ 0.33
VPS39-210ENST00000568357 PSRC1Q6PGN9 363 aaPredicted RBP17.1■□□□□ 0.33
VPS39-210ENST00000568357 OTOP2Q7RTS6 562 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 DEFB128Q7Z7B8 93 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 RPUSD2Q8IZ73 545 aaKnown RBP17.1■□□□□ 0.33
VPS39-210ENST00000568357 BLIDQ8IZY5 108 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 CAGE1Q8TC20 777 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 ADAMTS19Q8TE59 1207 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 HERVK_113Q902F9 699 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 C22orf23Q9BZE7 217 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 CXXC1Q9P0U4 656 aaPredicted RBP17.1■□□□□ 0.33
VPS39-210ENST00000568357 ZNF215Q9UL58 517 aaPredicted RBP17.1■□□□□ 0.33
VPS39-210ENST00000568357 STK36Q9NRP7 1315 aa17.1■□□□□ 0.33
VPS39-210ENST00000568357 IPO5O00410 1097 aaKnown RBP17.09■□□□□ 0.33
VPS39-210ENST00000568357 TREHO43280 583 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 CKBP12277 381 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 USP11P51784 963 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 ST3GAL1Q11201 340 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 PRR16Q569H4 304 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 GALNT17Q6IS24 598 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 SERINC5Q86VE9 423 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 FAM177A1Q8N128 213 aaPredicted RBP17.09■□□□□ 0.33
VPS39-210ENST00000568357 DAGLBQ8NCG7 672 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 AFAP1L1Q8TED9 768 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 PPM1EQ8WY54 764 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 GLG1Q92896 1179 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 ATP6V0A1Q93050 837 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 LENG9Q96B70 501 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 PHF20Q9BVI0 1012 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 SMARCAD1Q9H4L7 1026 aa17.09■□□□□ 0.33
VPS39-210ENST00000568357 ORC3Q9UBD5 711 aaPredicted RBP17.09■□□□□ 0.33
VPS39-210ENST00000568357 DDX39AO00148 427 aaKnown RBP17.08■□□□□ 0.32
VPS39-210ENST00000568357 LGR5O75473 907 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 ATG7O95352 703 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 SELPP16109 830 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 DNAJB2P25686 324 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 MARK3P27448 753 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 ADAM17P78536 824 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 RBL2Q08999 1139 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 ZNF618Q5T7W0 954 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 TRAF7Q6Q0C0 670 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 CCDC155Q8N6L0 562 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms