RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SEPT8Q92599 483 aa19.67■□□□□ 0.74
CLN3-216ENST00000565316 LRRC2Q9BYS8 371 aa19.67■□□□□ 0.74
CLN3-216ENST00000565316 OSBPL7Q9BZF2 842 aa19.67■□□□□ 0.74
CLN3-216ENST00000565316 ANO2Q9NQ90 1003 aa19.67■□□□□ 0.74
CLN3-216ENST00000565316 NRCAMQ92823 1304 aa19.67■□□□□ 0.74
CLN3-216ENST00000565316 FAM117BQ6P1L5 589 aa19.66■□□□□ 0.74
CLN3-216ENST00000565316 RAB11FIP4Q86YS3 637 aa19.66■□□□□ 0.74
CLN3-216ENST00000565316 TEX2Q8IWB9 1127 aa19.66■□□□□ 0.74
CLN3-216ENST00000565316 COL4A4P53420 1690 aaPredicted RBP19.65■□□□□ 0.74
CLN3-216ENST00000565316 DOCK5Q9H7D0 1870 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 GSTTP1A0A1W2PQM5 241 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 hCG_1642624A0A1W2PR95 340 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 MAFGO15525 162 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 CTSHP09668 335 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 TCF7P36402 384 aaPredicted RBP19.65■□□□□ 0.74
CLN3-216ENST00000565316 KCNQ1P51787 676 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 ARHGAP4P98171 946 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 SP4Q02446 784 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 UBE2SQ16763 222 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 MYOCDQ8IZQ8 938 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 CCDC82Q8N4S0 544 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 SEPT1Q8WYJ6 367 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 HLA-CQ95604 372 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 TOP1MTQ969P6 601 aa19.65■□□□□ 0.74
CLN3-216ENST00000565316 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.64■□□□□ 0.73
CLN3-216ENST00000565316 SPDYE3A6NKU9 549 aa19.64■□□□□ 0.73
CLN3-216ENST00000565316 EXOSC10Q01780 885 aaKnown RBP19.64■□□□□ 0.73
CLN3-216ENST00000565316 FUT2Q10981 343 aa19.64■□□□□ 0.73
CLN3-216ENST00000565316 TSGA10IPQ3SY00 556 aa19.64■□□□□ 0.73
CLN3-216ENST00000565316 MICU3Q86XE3 530 aa19.64■□□□□ 0.73
CLN3-216ENST00000565316 APBB2Q92870 758 aa19.64■□□□□ 0.73
CLN3-216ENST00000565316 NECAB3Q96P71 396 aaPredicted RBP19.64■□□□□ 0.73
CLN3-216ENST00000565316 JADE2Q9NQC1 790 aa19.64■□□□□ 0.73
CLN3-216ENST00000565316 MTUS1Q9ULD2 1270 aa19.64■□□□□ 0.73
CLN3-216ENST00000565316 PCDHA6Q9UN73 950 aa19.64■□□□□ 0.73
CLN3-216ENST00000565316 PCDHA8Q9Y5H6 950 aa19.64■□□□□ 0.73
CLN3-216ENST00000565316 MICAL3Q7RTP6 2002 aa19.64■□□□□ 0.73
CLN3-216ENST00000565316 MTMR1Q13613 665 aa19.63■□□□□ 0.73
CLN3-216ENST00000565316 RNF20Q5VTR2 975 aa19.63■□□□□ 0.73
CLN3-216ENST00000565316 TAF2Q6P1X5 1199 aa19.63■□□□□ 0.73
CLN3-216ENST00000565316 APOA5Q6Q788 366 aa19.63■□□□□ 0.73
CLN3-216ENST00000565316 HEATR3Q7Z4Q2 680 aa19.63■□□□□ 0.73
CLN3-216ENST00000565316 C17orf80Q9BSJ5 609 aa19.63■□□□□ 0.73
CLN3-216ENST00000565316 BRWD1Q9NSI6 2320 aa19.63■□□□□ 0.73
CLN3-216ENST00000565316 RBM28Q9NW13 759 aaKnown RBP19.63■□□□□ 0.73
CLN3-216ENST00000565316 ERAP1Q9NZ08 941 aa19.63■□□□□ 0.73
CLN3-216ENST00000565316 CNTNAP5Q8WYK1 1306 aa19.62■□□□□ 0.73
CLN3-216ENST00000565316 MBLAC1A4D2B0 266 aaPredicted RBP19.62■□□□□ 0.73
CLN3-216ENST00000565316 CHRNA1P02708 482 aa19.62■□□□□ 0.73
CLN3-216ENST00000565316 WWC2Q6AWC2 1192 aa19.62■□□□□ 0.73
CLN3-216ENST00000565316 SYNE3Q6ZMZ3 975 aa19.62■□□□□ 0.73
CLN3-216ENST00000565316 RUFY4Q6ZNE9 571 aa19.62■□□□□ 0.73
CLN3-216ENST00000565316 NEK1Q96PY6 1258 aa19.62■□□□□ 0.73
CLN3-216ENST00000565316 EHMT1Q9H9B1 1298 aa19.62■□□□□ 0.73
CLN3-216ENST00000565316 COL4A6Q14031 1691 aa19.62■□□□□ 0.73
CLN3-216ENST00000565316 PPFIA1Q13136 1202 aa19.61■□□□□ 0.73
CLN3-216ENST00000565316 MARCH8Q5T0T0 291 aa19.61■□□□□ 0.73
CLN3-216ENST00000565316 TYW1BQ6NUM6 668 aa19.61■□□□□ 0.73
CLN3-216ENST00000565316 PPP1R18Q6NYC8 613 aa19.61■□□□□ 0.73
CLN3-216ENST00000565316 DHX32Q7L7V1 743 aaKnown RBP19.61■□□□□ 0.73
CLN3-216ENST00000565316 FBXO22Q8NEZ5 403 aa19.61■□□□□ 0.73
CLN3-216ENST00000565316 SAMD11Q96NU1 681 aa19.61■□□□□ 0.73
CLN3-216ENST00000565316 IFIH1Q9BYX4 1025 aaKnown RBP19.61■□□□□ 0.73
CLN3-216ENST00000565316 SMARCAD1Q9H4L7 1026 aa19.61■□□□□ 0.73
CLN3-216ENST00000565316 RIC8AQ9NPQ8 531 aa19.61■□□□□ 0.73
CLN3-216ENST00000565316 BRPF3Q9ULD4 1205 aa19.61■□□□□ 0.73
CLN3-216ENST00000565316 SIP14410 1827 aa19.61■□□□□ 0.73
CLN3-216ENST00000565316 MGAT3Q09327 533 aa19.6■□□□□ 0.73
CLN3-216ENST00000565316 GRIK4Q16099 956 aa19.6■□□□□ 0.73
CLN3-216ENST00000565316 CENPQQ7L2Z9 268 aaPredicted RBP19.6■□□□□ 0.73
CLN3-216ENST00000565316 SKAP1Q86WV1 359 aa19.6■□□□□ 0.73
CLN3-216ENST00000565316 RASEFQ8IZ41 740 aa19.6■□□□□ 0.73
CLN3-216ENST00000565316 PCYT2Q99447 389 aa19.6■□□□□ 0.73
CLN3-216ENST00000565316 MXRA8Q9BRK3 442 aa19.6■□□□□ 0.73
CLN3-216ENST00000565316 KCNH7Q9NS40 1196 aa19.6■□□□□ 0.73
CLN3-216ENST00000565316 PKD2L1Q9P0L9 805 aa19.6■□□□□ 0.73
CLN3-216ENST00000565316 TCF20Q9UGU0 1960 aaKnown RBP19.6■□□□□ 0.73
CLN3-216ENST00000565316 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.59■□□□□ 0.73
CLN3-216ENST00000565316 FOSP01100 380 aaPredicted RBP19.59■□□□□ 0.73
CLN3-216ENST00000565316 RTN1Q16799 776 aa19.59■□□□□ 0.73
CLN3-216ENST00000565316 EPC2Q52LR7 807 aa19.59■□□□□ 0.73
CLN3-216ENST00000565316 CYP2W1Q8TAV3 490 aa19.59■□□□□ 0.73
CLN3-216ENST00000565316 GLG1Q92896 1179 aa19.59■□□□□ 0.73
CLN3-216ENST00000565316 YME1L1Q96TA2 773 aa19.59■□□□□ 0.73
CLN3-216ENST00000565316 JPH1Q9HDC5 661 aaPredicted RBP19.59■□□□□ 0.73
CLN3-216ENST00000565316 FAM217BQ9NTX9 383 aaPredicted RBP19.59■□□□□ 0.73
CLN3-216ENST00000565316 TUBE1Q9UJT0 475 aa19.59■□□□□ 0.73
CLN3-216ENST00000565316 NFASCO94856 1347 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 hCG_1984214I3L0E3 225 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 ZBTB43O43298 467 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 MARK3P27448 753 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 RCAN1P53805 252 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 NAPAP54920 295 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 LPIN1Q14693 890 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 ADCK5Q3MIX3 580 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 RSPH3Q86UC2 560 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 ZNF713Q8N859 430 aaPredicted RBP19.58■□□□□ 0.73
CLN3-216ENST00000565316 TCEANC2Q96MN5 208 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 SLC9A2Q9UBY0 812 aa19.58■□□□□ 0.73
CLN3-216ENST00000565316 V9GY48 417 aaPredicted RBP19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms