RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CNNM4Q6P4Q7 775 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 PADI6Q6TGC4 694 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 C11orf57Q6ZUT1 292 aaPredicted RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 AFG1LQ8WV93 481 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 BRI3BPQ8WY22 251 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 JAKMIP2Q96AA8 810 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 CDHR1Q96JP9 859 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 TEPSINQ96N21 525 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 ZIC5Q96T25 663 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 NOC4LQ9BVI4 516 aaKnown RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 KMT5AQ9NQR1 393 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 ZNF302Q9NR11 478 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 PDGFCQ9NRA1 345 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 FANCLQ9NW38 375 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 BTBD7Q9P203 1132 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 SYNRGQ9UMZ2 1314 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 CNTNAP1P78357 1384 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 MANSC4A6NHS7 340 aaPredicted RBP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 hCG_1984214I3L0E3 225 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 CETN3O15182 167 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 MSH4O15457 936 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 XRCC6P12956 609 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 HOXD10P28358 340 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 CETN1Q12798 172 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 PTPROQ16827 1216 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 SPRYD7Q5W111 196 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 PPP1R18Q6NYC8 613 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 ARMCX5Q6P1M9 558 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 SFR1Q86XK3 245 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 ZNF713Q8N859 430 aaPredicted RBP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 C7orf31Q8N865 590 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 GMCL1P1Q8NEA9 526 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 NACC1Q96RE7 527 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 ZSWIM4Q9H7M6 989 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 SH3GLB2Q9NR46 395 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 PARP2Q9UGN5 583 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 FRMD4BQ9Y2L6 1034 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 CACNA1FO60840 1977 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 SHANK3Q9BYB0 1731 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 ZBBXA8MT70 800 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 TMCO5BA8MYB1 307 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 RBAK-RBAKDNI3L0D1 243 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 CBFA2T2O43439 604 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 DKC1O60832 514 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 UPP2O95045 317 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 GJC1P36383 396 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 QARSP47897 775 aaKnown RBP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 FLT3LGP49771 235 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 FCGRTP55899 365 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 IFRD2Q12894 506 aaPredicted RBP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 NOGQ13253 232 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 LMBRD2Q68DH5 695 aaPredicted RBP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 MYOCDQ8IZQ8 938 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 CD99L2Q8TCZ2 262 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 ZBTB10Q96DT7 871 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 PAGE5Q96GU1 130 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 RNF208Q9H0X6 261 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 SLC38A10Q9HBR0 1119 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 TXNRD2Q9NNW7 524 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 PCDHA10Q9Y5I2 948 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 KDM3AQ9Y4C1 1321 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 ASB14A6NK59 587 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 FGFR1OPO95684 399 aaKnown RBP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 SLC25A27O95847 323 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 SLFN14P0C7P3 912 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 KRT5P13647 590 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 U2AF2P26368 475 aaKnown RBP eCLIP6.02□□□□□ -1.456e-8■■□□□ 14.1
VPS13C-209ENST00000560637 NMT1P30419 496 aaKnown RBP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 COPB2P35606 906 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 TNFAIP2Q03169 654 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 NEDD9Q14511 834 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 TKFCQ3LXA3 575 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 SEZ6Q53EL9 994 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 KIAA1328Q86T90 577 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 ZBTB8OSQ8IWT0 167 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 ZNF784Q8NCA9 323 aaPredicted RBP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 MXRA8Q9BRK3 442 aa6.02□□□□□ -1.45
VPS13C-209ENST00000560637 ZNF215Q9UL58 517 aaPredicted RBP6.02□□□□□ -1.45
VPS13C-209ENST00000560637 PITPNM2Q9BZ72 1349 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 LTBP3Q9NS15 1303 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 AKR1B10O60218 316 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 PPP6R2O75170 966 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 TCF7P36402 384 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 CLCN3P51790 818 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 CRHR2Q13324 411 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 KMT5BQ4FZB7 885 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 ARMCX2Q7L311 632 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 CATSPER4Q7RTX7 472 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 SIAH1Q8IUQ4 282 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 MB21D1Q8N884 522 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 RNF149Q8NC42 400 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 CCDC150Q8NCX0 1101 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 SCFD2Q8WU76 684 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 AGXT2Q9BYV1 514 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 IMPG2Q9BZV3 1241 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 PNMA2Q9UL42 364 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 COL4A3BPQ9Y5P4 624 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 RSPH10B2B2RC85 870 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 K7ERI5 159 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms