RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 PALM2Q8IXS6 379 aa7.94□□□□□ -1.14
VRK1-203ENST00000555067 LRRC47Q8N1G4 583 aaKnown RBP7.94□□□□□ -1.14
VRK1-203ENST00000555067 PIP4K2CQ8TBX8 421 aa7.94□□□□□ -1.14
VRK1-203ENST00000555067 JAM3Q9BX67 310 aa7.94□□□□□ -1.14
VRK1-203ENST00000555067 ARHGEF4Q9NR80 690 aa7.94□□□□□ -1.14
VRK1-203ENST00000555067 ING1Q9UK53 422 aaPredicted RBP7.94□□□□□ -1.14
VRK1-203ENST00000555067 CROTQ9UKG9 612 aa7.94□□□□□ -1.14
VRK1-203ENST00000555067 CDK11AQ9UQ88 783 aaPredicted RBP7.94□□□□□ -1.14
VRK1-203ENST00000555067 TESMINQ9Y4I5 508 aa7.94□□□□□ -1.14
VRK1-203ENST00000555067 HS3ST3A1Q9Y663 406 aa7.94□□□□□ -1.14
VRK1-203ENST00000555067 RAB33AQ14088 237 aa7.93□□□□□ -1.14
VRK1-203ENST00000555067 LBX2Q6XYB7 198 aa7.93□□□□□ -1.14
VRK1-203ENST00000555067 DPH6Q7L8W6 267 aa7.93□□□□□ -1.14
VRK1-203ENST00000555067 OTOP3Q7RTS5 596 aa7.93□□□□□ -1.14
VRK1-203ENST00000555067 IGDCC4Q8TDY8 1250 aa7.93□□□□□ -1.14
VRK1-203ENST00000555067 ZCCHC14Q8WYQ9 949 aaKnown RBP7.93□□□□□ -1.14
VRK1-203ENST00000555067 ZNF669Q96BR6 464 aaPredicted RBP7.93□□□□□ -1.14
VRK1-203ENST00000555067 PPARGC1AQ9UBK2 798 aaKnown RBP7.93□□□□□ -1.14
VRK1-203ENST00000555067 FTSJ1Q9UET6 329 aa7.93□□□□□ -1.14
VRK1-203ENST00000555067 TRAV20A0A0B4J274 112 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 SLC27A2O14975 620 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 PRODHO43272 600 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 MLLT6P55198 1093 aaPredicted RBP7.92□□□□□ -1.14
VRK1-203ENST00000555067 PPP2CBP62714 309 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 PPP2CAP67775 309 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 SPIRE1Q08AE8 756 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 VASNQ6EMK4 673 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 TMC5Q6UXY8 1006 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 NSMFQ6X4W1 530 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 UHMK1Q8TAS1 419 aaKnown RBP7.92□□□□□ -1.14
VRK1-203ENST00000555067 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.92□□□□□ -1.14
VRK1-203ENST00000555067 TRIM55Q9BYV6 548 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 SEMA4AQ9H3S1 761 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 DEF6Q9H4E7 631 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 DLL4Q9NR61 685 aa7.92□□□□□ -1.14
VRK1-203ENST00000555067 GNAT1P11488 350 aa7.91□□□□□ -1.14
VRK1-203ENST00000555067 PABPC1P11940 636 aaKnown RBP7.91□□□□□ -1.14
VRK1-203ENST00000555067 GPR85P60893 370 aa7.91□□□□□ -1.14
VRK1-203ENST00000555067 IFRD2Q12894 506 aaPredicted RBP7.91□□□□□ -1.14
VRK1-203ENST00000555067 SPDYAQ5MJ70 313 aa7.91□□□□□ -1.14
VRK1-203ENST00000555067 STYK1Q6J9G0 422 aa7.91□□□□□ -1.14
VRK1-203ENST00000555067 IFNL3Q8IZI9 196 aa7.91□□□□□ -1.14
VRK1-203ENST00000555067 KLHL36Q8N4N3 616 aa7.91□□□□□ -1.14
VRK1-203ENST00000555067 OSBP2Q969R2 916 aa7.91□□□□□ -1.14
VRK1-203ENST00000555067 PDGFDQ9GZP0 370 aaPredicted RBP7.91□□□□□ -1.14
VRK1-203ENST00000555067 MUSKO15146 869 aa7.9□□□□□ -1.14
VRK1-203ENST00000555067 NTRK3Q16288 839 aa7.9□□□□□ -1.14
VRK1-203ENST00000555067 TRMT10BQ6PF06 316 aaKnown RBP7.9□□□□□ -1.14
VRK1-203ENST00000555067 DTX3Q8N9I9 347 aa7.9□□□□□ -1.14
VRK1-203ENST00000555067 BARX1Q9HBU1 254 aaPredicted RBP7.9□□□□□ -1.14
VRK1-203ENST00000555067 WASF3Q9UPY6 502 aa7.9□□□□□ -1.14
VRK1-203ENST00000555067 TCAF1Q9Y4C2 921 aa7.9□□□□□ -1.14
VRK1-203ENST00000555067 CHGBP05060 677 aa7.89□□□□□ -1.15
VRK1-203ENST00000555067 SLFN13Q68D06 897 aa7.89□□□□□ -1.15
VRK1-203ENST00000555067 KCNT2Q6UVM3 1135 aa7.89□□□□□ -1.15
VRK1-203ENST00000555067 ARHGEF18Q6ZSZ5 1173 aa7.89□□□□□ -1.15
VRK1-203ENST00000555067 PROSER1Q86XN7 944 aa7.89□□□□□ -1.15
VRK1-203ENST00000555067 FAM47E-STBD1D6RA91 191 aa7.88□□□□□ -1.15
VRK1-203ENST00000555067 ZNF623O75123 536 aa7.88□□□□□ -1.15
VRK1-203ENST00000555067 FAHP16930 419 aa7.88□□□□□ -1.15
VRK1-203ENST00000555067 GRIN1Q05586 938 aa7.88□□□□□ -1.15
VRK1-203ENST00000555067 TUSC3Q13454 348 aa7.88□□□□□ -1.15
VRK1-203ENST00000555067 PAN2Q504Q3 1202 aaKnown RBP7.88□□□□□ -1.15
VRK1-203ENST00000555067 HABP4Q5JVS0 413 aaKnown RBP7.88□□□□□ -1.15
VRK1-203ENST00000555067 CKAP2LQ8IYA6 745 aa7.88□□□□□ -1.15
VRK1-203ENST00000555067 CLEC4DQ8WXI8 215 aa7.88□□□□□ -1.15
VRK1-203ENST00000555067 PTPN18Q99952 460 aa7.88□□□□□ -1.15
VRK1-203ENST00000555067 ALG1Q9BT22 464 aa7.88□□□□□ -1.15
VRK1-203ENST00000555067 U2SURPO15042 1029 aaKnown RBP7.87□□□□□ -1.15
VRK1-203ENST00000555067 STK10O94804 968 aaKnown RBP7.87□□□□□ -1.15
VRK1-203ENST00000555067 SOD2P04179 222 aa7.87□□□□□ -1.15
VRK1-203ENST00000555067 NFATC3Q12968 1075 aa7.87□□□□□ -1.15
VRK1-203ENST00000555067 SMAD2Q15796 467 aaKnown RBP7.87□□□□□ -1.15
VRK1-203ENST00000555067 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.87□□□□□ -1.15
VRK1-203ENST00000555067 KBTBD2Q8IY47 623 aa7.87□□□□□ -1.15
VRK1-203ENST00000555067 FAM177A1Q8N128 213 aaPredicted RBP7.87□□□□□ -1.15
VRK1-203ENST00000555067 Q8TCH9 128 aa7.87□□□□□ -1.15
VRK1-203ENST00000555067 MEGF9Q9H1U4 602 aa7.87□□□□□ -1.15
VRK1-203ENST00000555067 RBPJLQ9UBG7 517 aa7.87□□□□□ -1.15
VRK1-203ENST00000555067 DSEQ9UL01 958 aa7.87□□□□□ -1.15
VRK1-203ENST00000555067 MSRB2Q9Y3D2 182 aa7.87□□□□□ -1.15
VRK1-203ENST00000555067 COL6A1P12109 1028 aa7.86□□□□□ -1.15
VRK1-203ENST00000555067 EPHA5P54756 1037 aa7.86□□□□□ -1.15
VRK1-203ENST00000555067 KCTD1Q719H9 257 aa7.86□□□□□ -1.15
VRK1-203ENST00000555067 KCNJ15Q99712 375 aa7.86□□□□□ -1.15
VRK1-203ENST00000555067 ADAM29Q9UKF5 820 aa7.86□□□□□ -1.15
VRK1-203ENST00000555067 FBXO21O94952 628 aa7.85□□□□□ -1.15
VRK1-203ENST00000555067 COL6A2P12110 1019 aa7.85□□□□□ -1.15
VRK1-203ENST00000555067 ZC3H6P61129 1189 aaKnown RBP7.85□□□□□ -1.15
VRK1-203ENST00000555067 SKIDA1Q1XH10 827 aa7.85□□□□□ -1.15
VRK1-203ENST00000555067 YOD1Q5VVQ6 348 aaPredicted RBP7.85□□□□□ -1.15
VRK1-203ENST00000555067 SPATA9Q9BWV2 254 aa7.85□□□□□ -1.15
VRK1-203ENST00000555067 BLACEA4D250 179 aa7.84□□□□□ -1.15
VRK1-203ENST00000555067 NKRFO15226 690 aaKnown RBP eCLIP7.84□□□□□ -1.15
VRK1-203ENST00000555067 LTFP02788 710 aa7.84□□□□□ -1.15
VRK1-203ENST00000555067 ENO2P09104 434 aaPredicted RBP7.84□□□□□ -1.15
VRK1-203ENST00000555067 CD276Q5ZPR3 534 aa7.84□□□□□ -1.15
VRK1-203ENST00000555067 MAMDC2Q7Z304 686 aaPredicted RBP7.84□□□□□ -1.15
VRK1-203ENST00000555067 IPPKQ9H8X2 491 aa7.84□□□□□ -1.15
VRK1-203ENST00000555067 ARHGAP20Q9P2F6 1191 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms