RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 AEBP2Q6ZN18 517 aaPredicted RBP38.17■■■■□ 3.7
VRK1-203ENST00000555067 CHIC1Q5VXU3 224 aa35.99■■■■□ 3.35
VRK1-203ENST00000555067 SENP3Q9H4L4 574 aaPredicted RBP32.56■■■□□ 2.8
VRK1-203ENST00000555067 PHF23Q9BUL5 403 aaPredicted RBP32.1■■■□□ 2.73
VRK1-203ENST00000555067 FOXD1Q16676 465 aa30.39■■■□□ 2.46
VRK1-203ENST00000555067 PLPPR3Q6T4P5 718 aa28.6■■■□□ 2.17
VRK1-203ENST00000555067 MSH5O43196 834 aa28.52■■■□□ 2.16
VRK1-203ENST00000555067 POTEDQ86YR6 584 aa28.29■■■□□ 2.12
VRK1-203ENST00000555067 PIAS4Q8N2W9 510 aaPredicted RBP28.28■■■□□ 2.12
VRK1-203ENST00000555067 PPP6R1Q9UPN7 881 aa28.23■■■□□ 2.11
VRK1-203ENST00000555067 ADRA2BP18089 450 aa28.08■■■□□ 2.09
VRK1-203ENST00000555067 MAPK8IP2Q13387 824 aaPredicted RBP25.88■■□□□ 1.73
VRK1-203ENST00000555067 DMRT2Q9Y5R5 561 aa25.8■■□□□ 1.72
VRK1-203ENST00000555067 SCAF1Q9H7N4 1312 aaKnown RBP25.67■■□□□ 1.7
VRK1-203ENST00000555067 PPP4R3CPQ6ZMV5 832 aa25.04■■□□□ 1.6
VRK1-203ENST00000555067 HOXD11P31277 338 aaPredicted RBP24.78■■□□□ 1.56
VRK1-203ENST00000555067 CNKSR2Q8WXI2 1034 aa24.64■■□□□ 1.54
VRK1-203ENST00000555067 DCAF8L1A6NGE4 600 aa24.61■■□□□ 1.53
VRK1-203ENST00000555067 CACNB1Q02641 598 aaPredicted RBP24.58■■□□□ 1.53
VRK1-203ENST00000555067 RNF216Q9NWF9 866 aaPredicted RBP24.5■■□□□ 1.51
VRK1-203ENST00000555067 RNF39Q9H2S5 420 aa24.34■■□□□ 1.49
VRK1-203ENST00000555067 DNAJC5BQ9UF47 199 aa24.02■■□□□ 1.44
VRK1-203ENST00000555067 C1QBPQ07021 282 aaKnown RBP23.96■■□□□ 1.43
VRK1-203ENST00000555067 NCBP3Q53F19 620 aaKnown RBP23.96■■□□□ 1.43
VRK1-203ENST00000555067 NPM3O75607 178 aaKnown RBP23.66■■□□□ 1.38
VRK1-203ENST00000555067 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.49■■□□□ 1.35
VRK1-203ENST00000555067 U3KPZ7 1027 aaPredicted RBP23.05■■□□□ 1.28
VRK1-203ENST00000555067 KCNA4P22459 653 aa22.96■■□□□ 1.27
VRK1-203ENST00000555067 SPINK5Q9NQ38 1064 aaPredicted RBP22.77■■□□□ 1.24
VRK1-203ENST00000555067 DSG3P32926 999 aa22.71■■□□□ 1.23
VRK1-203ENST00000555067 SLC4A2P04920 1241 aa22.69■■□□□ 1.22
VRK1-203ENST00000555067 CAPN15O75808 1086 aa22.68■■□□□ 1.22
VRK1-203ENST00000555067 APLP2Q06481 763 aa22.32■■□□□ 1.16
VRK1-203ENST00000555067 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.26■■□□□ 1.15
VRK1-203ENST00000555067 TRHP20396 242 aaPredicted RBP22.26■■□□□ 1.15
VRK1-203ENST00000555067 HNRNPUL2Q1KMD3 747 aaKnown RBP22.26■■□□□ 1.15
VRK1-203ENST00000555067 ZNF219Q9P2Y4 722 aaPredicted RBP22.26■■□□□ 1.15
VRK1-203ENST00000555067 ABCB7O75027 752 aa22.14■■□□□ 1.13
VRK1-203ENST00000555067 SAMD1Q6SPF0 538 aaPredicted RBP22.13■■□□□ 1.13
VRK1-203ENST00000555067 POTEHQ6S545 545 aa22.11■■□□□ 1.13
VRK1-203ENST00000555067 MYCNP04198 464 aaPredicted RBP21.88■■□□□ 1.09
VRK1-203ENST00000555067 RBM42Q9BTD8 480 aaKnown RBP21.64■■□□□ 1.05
VRK1-203ENST00000555067 POLA2Q14181 598 aa21.63■■□□□ 1.05
VRK1-203ENST00000555067 SLC4A1APQ9BWU0 796 aaKnown RBP21.59■■□□□ 1.05
VRK1-203ENST00000555067 FOXD4L1Q9NU39 408 aa21.52■■□□□ 1.04
VRK1-203ENST00000555067 ATF5Q9Y2D1 282 aaPredicted RBP21.41■■□□□ 1.02
VRK1-203ENST00000555067 CHRDL2Q6WN34 429 aa21.26■□□□□ 0.99
VRK1-203ENST00000555067 ZBTB12Q9Y330 459 aaPredicted RBP21.18■□□□□ 0.98
VRK1-203ENST00000555067 ZBTB22O15209 634 aa21.13■□□□□ 0.97
VRK1-203ENST00000555067 AKT1S1Q96B36 256 aa21.1■□□□□ 0.97
VRK1-203ENST00000555067 OSCARQ8IYS5 282 aa20.97■□□□□ 0.95
VRK1-203ENST00000555067 ATXN8OSP0DMR3 200 aa20.91■□□□□ 0.94
VRK1-203ENST00000555067 REM2Q8IYK8 340 aaPredicted RBP20.9■□□□□ 0.94
VRK1-203ENST00000555067 PIP4P2Q8N4L2 257 aa20.71■□□□□ 0.91
VRK1-203ENST00000555067 PITPNM1O00562 1244 aa20.67■□□□□ 0.9
VRK1-203ENST00000555067 SP7Q8TDD2 431 aaPredicted RBP20.6■□□□□ 0.89
VRK1-203ENST00000555067 FXR2P51116 673 aaKnown RBP eCLIP20.59■□□□□ 0.89
VRK1-203ENST00000555067 SPDYE2BA6NHP3 402 aa20.53■□□□□ 0.88
VRK1-203ENST00000555067 SPDYE6P0CI01 402 aa20.53■□□□□ 0.88
VRK1-203ENST00000555067 SPDYE2Q495Y8 402 aa20.53■□□□□ 0.88
VRK1-203ENST00000555067 FBLN2P98095 1184 aa20.52■□□□□ 0.88
VRK1-203ENST00000555067 MKRN4PQ13434 485 aaPredicted RBP20.43■□□□□ 0.86
VRK1-203ENST00000555067 HAX1O00165 279 aa20.35■□□□□ 0.85
VRK1-203ENST00000555067 SSUH2Q9Y2M2 353 aa20.27■□□□□ 0.84
VRK1-203ENST00000555067 SPDYE1Q8NFV5 336 aaPredicted RBP20.21■□□□□ 0.83
VRK1-203ENST00000555067 ZNF692Q9BU19 519 aaPredicted RBP20.2■□□□□ 0.82
VRK1-203ENST00000555067 EVX2Q03828 476 aa20.16■□□□□ 0.82
VRK1-203ENST00000555067 CLEC11AQ9Y240 323 aa20.14■□□□□ 0.81
VRK1-203ENST00000555067 PRKAR2AP13861 404 aaKnown RBP20.11■□□□□ 0.81
VRK1-203ENST00000555067 C19orf67A6NJJ6 358 aa19.93■□□□□ 0.78
VRK1-203ENST00000555067 CSRNP3Q8WYN3 585 aa19.93■□□□□ 0.78
VRK1-203ENST00000555067 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
VRK1-203ENST00000555067 CHADLQ6NUI6 762 aa19.83■□□□□ 0.77
VRK1-203ENST00000555067 PRR29P0C7W0 189 aa19.8■□□□□ 0.76
VRK1-203ENST00000555067 GABBR2O75899 941 aa19.67■□□□□ 0.74
VRK1-203ENST00000555067 FARP1Q9Y4F1 1045 aaPredicted RBP19.53■□□□□ 0.72
VRK1-203ENST00000555067 CD44P16070 742 aaKnown RBP19.45■□□□□ 0.7
VRK1-203ENST00000555067 EHMT2Q96KQ7 1210 aa19.41■□□□□ 0.7
VRK1-203ENST00000555067 STAG3Q9UJ98 1225 aa19.32■□□□□ 0.68
VRK1-203ENST00000555067 LHX8Q68G74 356 aa19.31■□□□□ 0.68
VRK1-203ENST00000555067 CREBZFQ9NS37 354 aa19.31■□□□□ 0.68
VRK1-203ENST00000555067 POTEIP0CG38 1075 aa19.3■□□□□ 0.68
VRK1-203ENST00000555067 CLCN6P51797 869 aa19.3■□□□□ 0.68
VRK1-203ENST00000555067 SPDYE4A6NLX3 237 aa19.27■□□□□ 0.68
VRK1-203ENST00000555067 ZNF579Q8NAF0 562 aaKnown RBP19.19■□□□□ 0.66
VRK1-203ENST00000555067 ZRANB1Q9UGI0 708 aa19.13■□□□□ 0.65
VRK1-203ENST00000555067 DCBLD2Q96PD2 775 aa19.02■□□□□ 0.64
VRK1-203ENST00000555067 MNX1P50219 401 aaPredicted RBP18.99■□□□□ 0.63
VRK1-203ENST00000555067 GALR2O43603 387 aaPredicted RBP18.96■□□□□ 0.63
VRK1-203ENST00000555067 PAK3O75914 559 aaPredicted RBP18.89■□□□□ 0.61
VRK1-203ENST00000555067 NPM1P06748 294 aaKnown RBP eCLIP18.89■□□□□ 0.61
VRK1-203ENST00000555067 PROM2Q8N271 834 aa18.88■□□□□ 0.61
VRK1-203ENST00000555067 PHF12Q96QT6 1004 aa18.85■□□□□ 0.61
VRK1-203ENST00000555067 POTEB2H3BUK9 544 aa18.65■□□□□ 0.58
VRK1-203ENST00000555067 PELP1Q8IZL8 1130 aaKnown RBP18.63■□□□□ 0.57
VRK1-203ENST00000555067 MS4A3Q96HJ5 214 aa18.62■□□□□ 0.57
VRK1-203ENST00000555067 OTUD5Q96G74 571 aa18.61■□□□□ 0.57
VRK1-203ENST00000555067 ASTLQ6HA08 431 aaPredicted RBP18.57■□□□□ 0.56
VRK1-203ENST00000555067 CCDC61Q9Y6R9 512 aa18.54■□□□□ 0.56
VRK1-203ENST00000555067 ATMINO43313 823 aaPredicted RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms