RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CNTN2Q02246 1040 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 ZNF792Q3KQV3 632 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 ASPRV1Q53RT3 343 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 MICU3Q86XE3 530 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 ANKRD35Q8N283 1001 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 CEP112Q8N8E3 955 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 MSANTD4Q8NCY6 345 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 TRPV1Q8NER1 839 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 CCDC12Q8WUD4 166 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 NUP133Q8WUM0 1156 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 FGD4Q96M96 766 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 USP28Q96RU2 1077 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 LLPHQ9BRT6 129 aaKnown RBP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 MTA3Q9BTC8 594 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 FAM204AQ9H8W3 233 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 ANKZF1Q9H8Y5 726 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 JMJD4Q9H9V9 463 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 ABCB6Q9NP58 842 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 A1CFQ9NQ94 594 aaKnown RBP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 PAK6Q9NQU5 681 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 NFIBO00712 420 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 CPLX1O14810 134 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 CYTH3O43739 400 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 CUTAO60888 179 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 PHACTR2O75167 634 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 CASP8Q14790 479 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 GRM4Q14833 912 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 USH1GQ495M9 461 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 VSTM4Q8IW00 320 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 ZNF654Q8IZM8 581 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 CMTR1Q8N1G2 835 aaKnown RBP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 NSUN7Q8NE18 718 aaKnown RBP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 CHST13Q8NET6 341 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 U2AF1L4Q8WU68 220 aaKnown RBP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 PLEKHA4Q9H4M7 779 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 ZSWIM4Q9H7M6 989 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 ACAD9Q9H845 621 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 HMX1Q9NP08 348 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 KCNG1Q9UIX4 513 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 ZNF236Q9UL36 1845 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 RPTORQ8N122 1335 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 MYH6P13533 1939 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 PTPDC1A2A3K4 754 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 BIN1O00499 593 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 SGPL1O95470 568 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 ATP1A3P13637 1013 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 CDC27P30260 824 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 COPB2P35606 906 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 GJA8P48165 433 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 SETQ01105 290 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-216ENST00000552909 CDC37Q16543 378 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-216ENST00000552909 QRICH1Q2TAL8 776 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 CATIPQ7Z7H3 387 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 TMEM139Q8IV31 216 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 AFAP1L1Q8TED9 768 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 CLEC4DQ8WXI8 215 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 TBC1D5Q92609 795 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 PNKPQ96T60 521 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 BAG1Q99933 345 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-216ENST00000552909 ASTN1O14525 1302 aa8.53□□□□□ -1.04
LIMA1-216ENST00000552909 RBBP6Q7Z6E9 1792 aaKnown RBP8.53□□□□□ -1.04
LIMA1-216ENST00000552909 A0A1B0GVL5 298 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 A0A1W2PQ27 194 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 A0A1W2PQ64 194 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 A0A1W2PQD8 194 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 GOLGA8AA7E2F4 631 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 STX10O60499 249 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 PPP1R11O60927 126 aaPredicted RBP8.52□□□□□ -1.04
LIMA1-216ENST00000552909 TUBBP07437 444 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 HNRNPH1P31943 449 aaKnown RBP8.52□□□□□ -1.04
LIMA1-216ENST00000552909 GOLGA8FQ08AF8 430 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 GOLGA8DPQ0D2H9 430 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 MFSD14CQ5VZR4 134 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 ANO1Q5XXA6 986 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 OLFML2BQ68BL8 750 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 LHX8Q68G74 356 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 ADALQ6DHV7 355 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 NSMFQ6X4W1 530 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.52□□□□□ -1.04
LIMA1-216ENST00000552909 DHX37Q8IY37 1157 aaKnown RBP8.52□□□□□ -1.04
LIMA1-216ENST00000552909 TRMT44Q8IYL2 757 aaKnown RBP8.52□□□□□ -1.04
LIMA1-216ENST00000552909 CEP120Q8N960 986 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 FANCBQ8NB91 859 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 SMARCC2Q8TAQ2 1214 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 KAT2BQ92831 832 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 TACO1Q9BSH4 297 aaKnown RBP8.52□□□□□ -1.04
LIMA1-216ENST00000552909 TINF2Q9BSI4 451 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 SUGCTQ9HAC7 445 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 FAM217BQ9NTX9 383 aaPredicted RBP8.52□□□□□ -1.04
LIMA1-216ENST00000552909 CYP39A1Q9NYL5 469 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 FBXO40Q9UH90 709 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 PUF60Q9UHX1 559 aaKnown RBP8.52□□□□□ -1.04
LIMA1-216ENST00000552909 PCDHA7Q9UN72 937 aa8.52□□□□□ -1.04
LIMA1-216ENST00000552909 LCTP09848 1927 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 SOWAHBA6NEL2 793 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 PLEKHA8P1O95397 391 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 SNAI1O95863 264 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-216ENST00000552909 CYBAP13498 195 aa8.52□□□□□ -1.05
LIMA1-216ENST00000552909 CNGA1P29973 690 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms