RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PCDHA4Q9UN74 947 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 MTMR6Q9Y217 621 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 ZDHHC9Q9Y397 364 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 ATP6V1DQ9Y5K8 247 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 ZNF536O15090 1300 aa8.47□□□□□ -1.05
CD44-228ENST00000528455 TTLL8A6PVC2 850 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 M0R2N6 131 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 SLC25A27O95847 323 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 FOSP01100 380 aaPredicted RBP8.46□□□□□ -1.06
CD44-228ENST00000528455 SMTNP53814 917 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 NAPAP54920 295 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 GHRHRQ02643 423 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 KIF22Q14807 665 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 TMEM132BQ14DG7 1078 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 ATL3Q6DD88 541 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 MCF2L2Q86YR7 1114 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 RIOX2Q8IUF8 465 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 BLIDQ8IZY5 108 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 CPXCR1Q8N123 301 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 FAM200AQ8TCP9 573 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 STK32AQ8WU08 396 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 ATG4CQ96DT6 458 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 TEX13BQ9BXU2 312 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 GRIP2Q9C0E4 1043 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 GJB4Q9NTQ9 266 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 VPS54Q9P1Q0 977 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 ZNF214Q9UL59 606 aaPredicted RBP8.46□□□□□ -1.06
CD44-228ENST00000528455 KCNJ14Q9UNX9 436 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 ABCB11O95342 1321 aa8.46□□□□□ -1.06
CD44-228ENST00000528455 COL11A1P12107 1806 aaPredicted RBP8.45□□□□□ -1.06
CD44-228ENST00000528455 ZNFX1Q9P2E3 1918 aaKnown RBP8.45□□□□□ -1.06
CD44-228ENST00000528455 BTBD18B2RXH4 712 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 BACH1O14867 736 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 COPB2P35606 906 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 KRT2P35908 639 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 EPHA4P54764 986 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 SOX10P56693 466 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 SNAP25P60880 206 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 GUCY1B3Q02153 619 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 NPY5RQ15761 445 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 CCDC174Q6PII3 467 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 CLEC17AQ6ZS10 378 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 BRAPQ7Z569 592 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 DIS3L2Q8IYB7 885 aaKnown RBP8.45□□□□□ -1.06
CD44-228ENST00000528455 CHST13Q8NET6 341 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 GPRC5AQ8NFJ5 357 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 RNF217Q8TC41 542 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 CUL5Q93034 780 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 SHISA4Q96DD7 197 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 TRERF1Q96PN7 1200 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 RAVER2Q9HCJ3 691 aaKnown RBP8.45□□□□□ -1.06
CD44-228ENST00000528455 BTBD7Q9P203 1132 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 MORF4L1Q9UBU8 362 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 FBXO40Q9UH90 709 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 CCPG1Q9ULG6 757 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 PTPN22Q9Y2R2 807 aa8.45□□□□□ -1.06
CD44-228ENST00000528455 VPS37CA5D8V6 355 aaPredicted RBP8.44□□□□□ -1.06
CD44-228ENST00000528455 A6NJY4 79 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 MEIS2O14770 477 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 STRNO43815 780 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 F13A1P00488 732 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 CYP2C8P10632 490 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 ALAS1P13196 640 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 USP11P51784 963 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 ADCY7P51828 1080 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 CCNA1P78396 465 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 PKP1Q13835 747 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 MTFR1Q15390 333 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 TLR1Q15399 786 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 USH1GQ495M9 461 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 TMEM164Q5U3C3 297 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 MCTP1Q6DN14 999 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 C17orf99Q6UX52 265 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 NOSTRINQ8IVI9 506 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 TSEN2Q8NCE0 465 aaKnown RBP8.44□□□□□ -1.06
CD44-228ENST00000528455 SHCBP1Q8NEM2 672 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 SMCR8Q8TEV9 937 aaPredicted RBP8.44□□□□□ -1.06
CD44-228ENST00000528455 CLEC4DQ8WXI8 215 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 TNFRSF25Q93038 417 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 TRIM47Q96LD4 638 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 PARK7Q99497 189 aaKnown RBP8.44□□□□□ -1.06
CD44-228ENST00000528455 SPATC1LQ9H0A9 340 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 MROH8Q9H579 483 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 DNMT3LQ9UJW3 386 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 CFAP45Q9UL16 551 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 PCDHA6Q9UN73 950 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 RIPK3Q9Y572 518 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 PCDHA8Q9Y5H6 950 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 TCHHQ07283 1943 aa8.44□□□□□ -1.06
CD44-228ENST00000528455 FIGNL2A6NMB9 653 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 GCOM1H8Y6P7 765 aaPredicted RBP8.43□□□□□ -1.06
CD44-228ENST00000528455 OPLAHO14841 1288 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 CNMDO75829 334 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 POLR2MP0CAP2 368 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 TRAPPC10P48553 1259 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 HSD17B4P51659 736 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 ERVK-24P63145 666 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 LACTBP83111 547 aaPredicted RBP8.43□□□□□ -1.06
CD44-228ENST00000528455 RESTQ13127 1097 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 AP3B2Q13367 1082 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms