RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 NR3C2P08235 984 aa12.18□□□□□ -0.46
CPSF1-203ENST00000527916 GNAT1P11488 350 aa12.18□□□□□ -0.46
CPSF1-203ENST00000527916 EIF2AK2P19525 551 aaKnown RBP12.18□□□□□ -0.46
CPSF1-203ENST00000527916 NDUFV1P49821 464 aa12.18□□□□□ -0.46
CPSF1-203ENST00000527916 ZXDAP98168 799 aa12.18□□□□□ -0.46
CPSF1-203ENST00000527916 GHRHRQ02643 423 aa12.18□□□□□ -0.46
CPSF1-203ENST00000527916 TRAF1Q13077 416 aa12.18□□□□□ -0.46
CPSF1-203ENST00000527916 SART3Q15020 963 aaKnown RBP12.18□□□□□ -0.46
CPSF1-203ENST00000527916 QRICH1Q2TAL8 776 aa12.18□□□□□ -0.46
CPSF1-203ENST00000527916 MYSM1Q5VVJ2 828 aa12.18□□□□□ -0.46
CPSF1-203ENST00000527916 CENPQQ7L2Z9 268 aaPredicted RBP12.18□□□□□ -0.46
CPSF1-203ENST00000527916 RALYLQ86SE5 291 aaKnown RBP12.18□□□□□ -0.46
CPSF1-203ENST00000527916 MAD2L2Q9UI95 211 aa12.18□□□□□ -0.46
CPSF1-203ENST00000527916 MYO15AQ9UKN7 3530 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.17□□□□□ -0.46
CPSF1-203ENST00000527916 IFIT3O14879 490 aaKnown RBP12.17□□□□□ -0.46
CPSF1-203ENST00000527916 EYA4O95677 639 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 CTSHP09668 335 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 ADAM15Q13444 863 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 HIC1Q14526 733 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 CELF3Q5SZQ8 465 aaKnown RBP12.17□□□□□ -0.46
CPSF1-203ENST00000527916 STAG2Q8N3U4 1231 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 IGDCC4Q8TDY8 1250 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 TBC1D5Q92609 795 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 ATOH1Q92858 354 aaPredicted RBP12.17□□□□□ -0.46
CPSF1-203ENST00000527916 CLP1Q92989 425 aaKnown RBP12.17□□□□□ -0.46
CPSF1-203ENST00000527916 MAP3K14Q99558 947 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 PLVAPQ9BX97 442 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 AMNQ9BXJ7 453 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 RIOX1Q9H6W3 641 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 VAT1LQ9HCJ6 419 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 PXMP2Q9NR77 195 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 COL20A1Q9P218 1284 aa12.17□□□□□ -0.46
CPSF1-203ENST00000527916 RBM8AQ9Y5S9 174 aaKnown RBP12.17□□□□□ -0.46
CPSF1-203ENST00000527916 ADGRA3Q8IWK6 1321 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 H3BRB1 525 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 ZBTB5O15062 677 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 TREHO43280 583 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 GGPS1O95749 300 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 MMP1P03956 469 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 SMIM10L2AP0DMW4 78 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 SMIM10L2BP0DMW5 78 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 TGFB3P10600 412 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 SIGLEC14Q08ET2 396 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 TROAPQ12815 778 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 BTG3Q14201 252 aaPredicted RBP12.16□□□□□ -0.46
CPSF1-203ENST00000527916 GRM4Q14833 912 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 WTAPQ15007 396 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 HSDL1Q3SXM5 330 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 BMP2KLQ5H9B9 411 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 STOX1Q6ZVD7 989 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 TMTC2Q8N394 836 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 MSLNLQ96KJ4 702 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 C16orf70Q9BSU1 422 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 TUT1Q9H6E5 874 aaKnown RBP12.16□□□□□ -0.46
CPSF1-203ENST00000527916 MLXIPQ9HAP2 919 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 FAM86C1Q9NVL1 165 aa12.16□□□□□ -0.46
CPSF1-203ENST00000527916 BAZ2BQ9UIF8 2168 aaKnown RBP12.15□□□□□ -0.46
CPSF1-203ENST00000527916 LOC730098B7Z3J9 87 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 NOP56O00567 594 aaKnown RBP12.15□□□□□ -0.46
CPSF1-203ENST00000527916 LINC01565O15544 149 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 DHX16O60231 1041 aaKnown RBP12.15□□□□□ -0.46
CPSF1-203ENST00000527916 CSPG5O95196 566 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 CFBP00751 764 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 MYCLP12524 364 aaPredicted RBP12.15□□□□□ -0.46
CPSF1-203ENST00000527916 SMARCA1P28370 1054 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 HOXC8P31273 242 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 GTF2F1P35269 517 aaKnown RBP eCLIP12.15□□□□□ -0.46
CPSF1-203ENST00000527916 HSD17B4P51659 736 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 NUBP1P53384 320 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 CBX2Q14781 532 aaPredicted RBP12.15□□□□□ -0.46
CPSF1-203ENST00000527916 CATIPQ7Z7H3 387 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 MB21D2Q8IYB1 491 aaPredicted RBP12.15□□□□□ -0.46
CPSF1-203ENST00000527916 SMRP1Q8NCR6 262 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 ESYT1Q9BSJ8 1104 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 LSG1Q9H089 658 aaKnown RBP12.15□□□□□ -0.46
CPSF1-203ENST00000527916 RNPEPQ9H4A4 650 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 TAF6LQ9Y6J9 622 aa12.15□□□□□ -0.46
CPSF1-203ENST00000527916 KAT6AQ92794 2004 aa12.15□□□□□ -0.47
CPSF1-203ENST00000527916 ATG2AQ2TAZ0 1938 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 OPLAHO14841 1288 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 SORBS3O60504 671 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 ANTXR2P58335 489 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 COASYQ13057 564 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 NECTIN1Q15223 517 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 NAALADL2Q58DX5 795 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 EFHBQ8N7U6 833 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 P2RX5Q93086 422 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 USP26Q9BXU7 913 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 ALG13Q9NP73 1137 aaKnown RBP12.14□□□□□ -0.47
CPSF1-203ENST00000527916 PLAGL2Q9UPG8 496 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 PCDHA1Q9Y5I3 950 aa12.14□□□□□ -0.47
CPSF1-203ENST00000527916 TTC3P53804 2025 aa12.13□□□□□ -0.47
CPSF1-203ENST00000527916 KMT2EQ8IZD2 1858 aa12.13□□□□□ -0.47
CPSF1-203ENST00000527916 PNMA6FA0A0J9YX94 578 aa12.13□□□□□ -0.47
CPSF1-203ENST00000527916 RBAK-RBAKDNI3L0D1 243 aa12.13□□□□□ -0.47
CPSF1-203ENST00000527916 CYTH3O43739 400 aa12.13□□□□□ -0.47
CPSF1-203ENST00000527916 PPP1R11O60927 126 aaPredicted RBP12.13□□□□□ -0.47
CPSF1-203ENST00000527916 LGALS2P05162 132 aa12.13□□□□□ -0.47
CPSF1-203ENST00000527916 LINC00271P0C7V0 271 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms