RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CHST14Q8NCH0 376 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 YIPF4Q9BSR8 244 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 ATP23Q9Y6H3 246 aa6.3□□□□□ -1.4
CD44-215ENST00000525241 KPNA6O60684 536 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 CLASP2O75122 1294 aaKnown RBP6.29□□□□□ -1.4
CD44-215ENST00000525241 ZBTB48P10074 688 aaPredicted RBP6.29□□□□□ -1.4
CD44-215ENST00000525241 FAHP16930 419 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 PTPN1P18031 435 aaKnown RBP6.29□□□□□ -1.4
CD44-215ENST00000525241 PI3P19957 117 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 MASP1P48740 699 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 NEK4P51957 841 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 KCNA10Q16322 511 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 TAF7LQ5H9L4 462 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 BTBD8Q5XKL5 378 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 ZC3H18Q86VM9 953 aaKnown RBP6.29□□□□□ -1.4
CD44-215ENST00000525241 ANKLE2Q86XL3 938 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 CILP2Q8IUL8 1156 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 NOSTRINQ8IVI9 506 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 DDX11Q96FC9 970 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 NGRNQ9NPE2 291 aaKnown RBP6.29□□□□□ -1.4
CD44-215ENST00000525241 CNOT6Q9ULM6 557 aaKnown RBP6.29□□□□□ -1.4
CD44-215ENST00000525241 WASF3Q9UPY6 502 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 FAN1Q9Y2M0 1017 aa6.29□□□□□ -1.4
CD44-215ENST00000525241 SLC12A8A0AV02 714 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 NPIPB6E9PJ23 425 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 PDE8AO60658 829 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 CYP2C8P10632 490 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 YBX3P16989 372 aaKnown RBP eCLIP6.28□□□□□ -1.4
CD44-215ENST00000525241 LINC00310P59036 64 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 NKX3-2P78367 333 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 PKN1Q16512 942 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 ARHGAP44Q17R89 818 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 CPZQ66K79 652 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 ZNF662Q6ZS27 426 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 PROSER1Q86XN7 944 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 THNSL2Q86YJ6 484 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 PPM1KQ8N3J5 372 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 NOX5Q96PH1 765 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 GORASP1Q9BQQ3 440 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 KRTAP4-8Q9BYQ9 185 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 RBPJLQ9UBG7 517 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 B4GALT6Q9UBX8 382 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 KCTD3Q9Y597 815 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 SBNO2Q9Y2G9 1366 aa6.28□□□□□ -1.4
CD44-215ENST00000525241 PTPDC1A2A3K4 754 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 C4BPAP04003 597 aaKnown RBP6.27□□□□□ -1.41
CD44-215ENST00000525241 PLA2G1BP04054 148 aaKnown RBP6.27□□□□□ -1.41
CD44-215ENST00000525241 GJA4P35212 333 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 HTRA3P83110 453 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 SEPT7Q16181 437 aaKnown RBP6.27□□□□□ -1.41
CD44-215ENST00000525241 PKN3Q6P5Z2 889 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 CNKSR3Q6P9H4 555 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 EP400NLQ6ZTU2 488 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 KIF18BQ86Y91 864 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 AHI1Q8N157 1196 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 LINC00482Q8N8I6 264 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 DLG3Q92796 817 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 BOCQ9BWV1 1114 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 CABP5Q9NP86 173 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 RIC8BQ9NVN3 520 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 MAPRE3Q9UPY8 281 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 B3GALT1Q9Y5Z6 326 aa6.27□□□□□ -1.41
CD44-215ENST00000525241 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.26□□□□□ -1.41
CD44-215ENST00000525241 SCDO00767 359 aa6.26□□□□□ -1.41
CD44-215ENST00000525241 F2P00734 622 aa6.26□□□□□ -1.41
CD44-215ENST00000525241 ITGA1P56199 1179 aa6.26□□□□□ -1.41
CD44-215ENST00000525241 IRF9Q00978 393 aa6.26□□□□□ -1.41
CD44-215ENST00000525241 SKOR2Q2VWA4 1001 aaPredicted RBP6.26□□□□□ -1.41
CD44-215ENST00000525241 RNF180Q86T96 592 aa6.26□□□□□ -1.41
CD44-215ENST00000525241 FNIP1Q8TF40 1166 aa6.26□□□□□ -1.41
CD44-215ENST00000525241 DACT3Q96B18 629 aaPredicted RBP6.26□□□□□ -1.41
CD44-215ENST00000525241 C11orf84Q9BUA3 381 aaPredicted RBP6.26□□□□□ -1.41
CD44-215ENST00000525241 PCDH18Q9HCL0 1135 aa6.26□□□□□ -1.41
CD44-215ENST00000525241 PRKAB1Q9Y478 270 aa6.26□□□□□ -1.41
CD44-215ENST00000525241 ZNF891A8MT65 544 aaPredicted RBP6.25□□□□□ -1.41
CD44-215ENST00000525241 DVL2O14641 736 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 VIL1P09327 827 aaKnown RBP6.25□□□□□ -1.41
CD44-215ENST00000525241 THBS2P35442 1172 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 STAT3P40763 770 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 DSG1Q02413 1049 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 DBPQ10586 325 aaPredicted RBP6.25□□□□□ -1.41
CD44-215ENST00000525241 ADAM9Q13443 819 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 ZNF385BQ569K4 471 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 CD276Q5ZPR3 534 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 CREB3L3Q68CJ9 461 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 LIPIQ6XZB0 460 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 STK32CQ86UX6 486 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 NXPE1Q8N323 547 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 PWWP2AQ96N64 755 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 KCNH7Q9NS40 1196 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.25□□□□□ -1.41
CD44-215ENST00000525241 PMF1-BGLAPU3KQ54 211 aa6.25□□□□□ -1.41
CD44-215ENST00000525241 KRT37O76014 449 aa6.24□□□□□ -1.41
CD44-215ENST00000525241 ATP2A2P16615 1042 aaKnown RBP6.24□□□□□ -1.41
CD44-215ENST00000525241 CAP1Q01518 475 aa6.24□□□□□ -1.41
CD44-215ENST00000525241 DLX2Q07687 328 aaPredicted RBP6.24□□□□□ -1.41
CD44-215ENST00000525241 TMC5Q6UXY8 1006 aa6.24□□□□□ -1.41
CD44-215ENST00000525241 KYQ8NBH2 561 aa6.24□□□□□ -1.41
CD44-215ENST00000525241 LEO1Q8WVC0 666 aaPredicted RBP6.24□□□□□ -1.41
CD44-215ENST00000525241 CAAP1Q9H8G2 361 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms