RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 AEBP2Q6ZN18 517 aaPredicted RBP22.97■■□□□ 1.27
CD44-215ENST00000525241 CHIC1Q5VXU3 224 aa22.53■■□□□ 1.2
CD44-215ENST00000525241 PHF23Q9BUL5 403 aaPredicted RBP19.86■□□□□ 0.77
CD44-215ENST00000525241 SENP3Q9H4L4 574 aaPredicted RBP19.42■□□□□ 0.7
CD44-215ENST00000525241 PLPPR3Q6T4P5 718 aa18.32■□□□□ 0.52
CD44-215ENST00000525241 FOXD1Q16676 465 aa18.04■□□□□ 0.48
CD44-215ENST00000525241 PPP6R1Q9UPN7 881 aa17.49■□□□□ 0.39
CD44-215ENST00000525241 ADRA2BP18089 450 aa17.45■□□□□ 0.38
CD44-215ENST00000525241 PIAS4Q8N2W9 510 aaPredicted RBP17.01■□□□□ 0.31
CD44-215ENST00000525241 MSH5O43196 834 aa16.54■□□□□ 0.24
CD44-215ENST00000525241 PPP4R3CPQ6ZMV5 832 aa16.18■□□□□ 0.18
CD44-215ENST00000525241 KCNA4P22459 653 aa15.97■□□□□ 0.15
CD44-215ENST00000525241 SCAF1Q9H7N4 1312 aaKnown RBP15.92■□□□□ 0.14
CD44-215ENST00000525241 MAPK8IP2Q13387 824 aaPredicted RBP15.81■□□□□ 0.12
CD44-215ENST00000525241 NCBP3Q53F19 620 aaKnown RBP15.75■□□□□ 0.11
CD44-215ENST00000525241 CNKSR2Q8WXI2 1034 aa15.69■□□□□ 0.1
CD44-215ENST00000525241 NPM3O75607 178 aaKnown RBP15.56■□□□□ 0.08
CD44-215ENST00000525241 DMRT2Q9Y5R5 561 aa15.54■□□□□ 0.08
CD44-215ENST00000525241 RNF216Q9NWF9 866 aaPredicted RBP15.36■□□□□ 0.05
CD44-215ENST00000525241 HOXD11P31277 338 aaPredicted RBP15.28■□□□□ 0.04
CD44-215ENST00000525241 SLC4A1APQ9BWU0 796 aaKnown RBP15.19■□□□□ 0.02
CD44-215ENST00000525241 DNAJC5BQ9UF47 199 aa15.13■□□□□ 0.01
CD44-215ENST00000525241 EHMT2Q96KQ7 1210 aa14.9□□□□□ -0.02
CD44-215ENST00000525241 POTEDQ86YR6 584 aa14.87□□□□□ -0.03
CD44-215ENST00000525241 DCAF8L1A6NGE4 600 aa14.81□□□□□ -0.04
CD44-215ENST00000525241 CSRNP3Q8WYN3 585 aa14.72□□□□□ -0.05
CD44-215ENST00000525241 ZBTB22O15209 634 aa14.71□□□□□ -0.05
CD44-215ENST00000525241 SLC4A2P04920 1241 aa14.69□□□□□ -0.06
CD44-215ENST00000525241 FOXD4L1Q9NU39 408 aa14.63□□□□□ -0.07
CD44-215ENST00000525241 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.52□□□□□ -0.09
CD44-215ENST00000525241 MYCNP04198 464 aaPredicted RBP14.36□□□□□ -0.11
CD44-215ENST00000525241 U3KPZ7 1027 aaPredicted RBP14.34□□□□□ -0.11
CD44-215ENST00000525241 RNF39Q9H2S5 420 aa14.22□□□□□ -0.13
CD44-215ENST00000525241 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.15□□□□□ -0.14
CD44-215ENST00000525241 HNRNPUL2Q1KMD3 747 aaKnown RBP14.15□□□□□ -0.14
CD44-215ENST00000525241 SAMD1Q6SPF0 538 aaPredicted RBP14.12□□□□□ -0.15
CD44-215ENST00000525241 ATXN8OSP0DMR3 200 aa14.11□□□□□ -0.15
CD44-215ENST00000525241 C1QBPQ07021 282 aaKnown RBP14.03□□□□□ -0.16
CD44-215ENST00000525241 ATF5Q9Y2D1 282 aaPredicted RBP14.01□□□□□ -0.17
CD44-215ENST00000525241 APLP2Q06481 763 aa13.94□□□□□ -0.18
CD44-215ENST00000525241 SPINK5Q9NQ38 1064 aaPredicted RBP13.9□□□□□ -0.18
CD44-215ENST00000525241 CAPN15O75808 1086 aa13.79□□□□□ -0.2
CD44-215ENST00000525241 TRHP20396 242 aaPredicted RBP13.77□□□□□ -0.21
CD44-215ENST00000525241 ZNF219Q9P2Y4 722 aaPredicted RBP13.76□□□□□ -0.21
CD44-215ENST00000525241 CACNB1Q02641 598 aaPredicted RBP13.72□□□□□ -0.21
CD44-215ENST00000525241 POLA2Q14181 598 aa13.59□□□□□ -0.23
CD44-215ENST00000525241 DSG3P32926 999 aa13.57□□□□□ -0.24
CD44-215ENST00000525241 ABCB7O75027 752 aa13.56□□□□□ -0.24
CD44-215ENST00000525241 MKRN4PQ13434 485 aaPredicted RBP13.41□□□□□ -0.26
CD44-215ENST00000525241 FBLN2P98095 1184 aa13.34□□□□□ -0.27
CD44-215ENST00000525241 ZBTB12Q9Y330 459 aaPredicted RBP13.34□□□□□ -0.27
CD44-215ENST00000525241 FKBP8Q14318 412 aa13.26□□□□□ -0.29
CD44-215ENST00000525241 SPDYE4A6NLX3 237 aa13.13□□□□□ -0.31
CD44-215ENST00000525241 OSCARQ8IYS5 282 aa13.12□□□□□ -0.31
CD44-215ENST00000525241 SPDYE2BA6NHP3 402 aa13.02□□□□□ -0.33
CD44-215ENST00000525241 SPDYE6P0CI01 402 aa13.02□□□□□ -0.33
CD44-215ENST00000525241 SPDYE2Q495Y8 402 aa13.02□□□□□ -0.33
CD44-215ENST00000525241 ZNF692Q9BU19 519 aaPredicted RBP12.98□□□□□ -0.33
CD44-215ENST00000525241 PROM2Q8N271 834 aa12.97□□□□□ -0.33
CD44-215ENST00000525241 SSUH2Q9Y2M2 353 aa12.96□□□□□ -0.33
CD44-215ENST00000525241 RBM42Q9BTD8 480 aaKnown RBP12.89□□□□□ -0.35
CD44-215ENST00000525241 PABPN1Q86U42 306 aaKnown RBP eCLIP12.82□□□□□ -0.36
CD44-215ENST00000525241 AKT1S1Q96B36 256 aa12.78□□□□□ -0.36
CD44-215ENST00000525241 FBXO3Q9UK99 471 aa12.73□□□□□ -0.37
CD44-215ENST00000525241 REM2Q8IYK8 340 aaPredicted RBP12.67□□□□□ -0.38
CD44-215ENST00000525241 STAG3Q9UJ98 1225 aa12.62□□□□□ -0.39
CD44-215ENST00000525241 SPDYE1Q8NFV5 336 aaPredicted RBP12.6□□□□□ -0.39
CD44-215ENST00000525241 VASPP50552 380 aaPredicted RBP12.59□□□□□ -0.39
CD44-215ENST00000525241 PITPNM1O00562 1244 aa12.52□□□□□ -0.41
CD44-215ENST00000525241 CLEC11AQ9Y240 323 aa12.52□□□□□ -0.41
CD44-215ENST00000525241 IFNLR1Q8IU57 520 aaPredicted RBP12.45□□□□□ -0.42
CD44-215ENST00000525241 PRR29P0C7W0 189 aa12.44□□□□□ -0.42
CD44-215ENST00000525241 MIER1Q8N108 512 aa12.42□□□□□ -0.42
CD44-215ENST00000525241 PLCD3Q8N3E9 789 aa12.41□□□□□ -0.42
CD44-215ENST00000525241 CREBZFQ9NS37 354 aa12.34□□□□□ -0.43
CD44-215ENST00000525241 CHRDL2Q6WN34 429 aa12.32□□□□□ -0.44
CD44-215ENST00000525241 PLEKHG5O94827 1062 aa12.31□□□□□ -0.44
CD44-215ENST00000525241 KLHL34Q8N239 644 aa12.31□□□□□ -0.44
CD44-215ENST00000525241 RTN4Q9NQC3 1192 aaKnown RBP12.3□□□□□ -0.44
CD44-215ENST00000525241 AMER1Q5JTC6 1135 aaPredicted RBP12.29□□□□□ -0.44
CD44-215ENST00000525241 FXR2P51116 673 aaKnown RBP eCLIP12.27□□□□□ -0.45
CD44-215ENST00000525241 MNX1P50219 401 aaPredicted RBP12.25□□□□□ -0.45
CD44-215ENST00000525241 SPOCK2Q92563 424 aa12.25□□□□□ -0.45
CD44-215ENST00000525241 ZBTB47Q9UFB7 747 aaPredicted RBP12.25□□□□□ -0.45
CD44-215ENST00000525241 CHADLQ6NUI6 762 aa12.23□□□□□ -0.45
CD44-215ENST00000525241 PIP4P2Q8N4L2 257 aa12.21□□□□□ -0.45
CD44-215ENST00000525241 PRKAR2AP13861 404 aaKnown RBP12.2□□□□□ -0.46
CD44-215ENST00000525241 NUBP1P53384 320 aa12.13□□□□□ -0.47
CD44-215ENST00000525241 FARP1Q9Y4F1 1045 aaPredicted RBP12.13□□□□□ -0.47
CD44-215ENST00000525241 NPM1P06748 294 aaKnown RBP eCLIP12.09□□□□□ -0.47
CD44-215ENST00000525241 PKD2Q13563 968 aa12.08□□□□□ -0.48
CD44-215ENST00000525241 RASEFQ8IZ41 740 aa12.04□□□□□ -0.48
CD44-215ENST00000525241 CIZ1Q9ULV3 898 aaPredicted RBP12.02□□□□□ -0.49
CD44-215ENST00000525241 GSE1Q14687 1217 aa11.99□□□□□ -0.49
CD44-215ENST00000525241 DCAF8Q5TAQ9 597 aa11.99□□□□□ -0.49
CD44-215ENST00000525241 FAM212AQ96EL1 285 aa11.98□□□□□ -0.49
CD44-215ENST00000525241 ECM2O94769 699 aaPredicted RBP11.94□□□□□ -0.5
CD44-215ENST00000525241 TSPYL2Q9H2G4 693 aaPredicted RBP11.92□□□□□ -0.5
CD44-215ENST00000525241 TRIM41Q8WV44 630 aa11.9□□□□□ -0.5
CD44-215ENST00000525241 RGL2O15211 777 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms