RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 JPH1Q9HDC5 661 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 UBIAD1Q9Y5Z9 338 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 ALPK3Q96L96 1907 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 PDE4DIPQ5VU43 2346 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 MROH7Q68CQ1 1323 aa8.77□□□□□ -1.01
LIMCH1-222ENST00000515847 MYH7BA7E2Y1 1941 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 CYP3A7-CYP3A51PA0A087WV96 503 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 WDR64B1ANS9 1081 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 SPATA31C2B4DYI2 1134 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 M0R2N6 131 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 CTAGE5O15320 804 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 DYNC1LI2O43237 492 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 STX6O43752 255 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 GAS7O60861 476 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 GGPS1O95749 300 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 COL6A1P12109 1028 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 UBA1P22314 1058 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 CYP3A7P24462 503 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 U2AF2P26368 475 aaKnown RBP eCLIP8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 SFNP31947 248 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 JAK3P52333 1124 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 BEX3Q00994 111 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 GUCY1B3Q02153 619 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 NPY5RQ15761 445 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 FSCN1Q16658 493 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 DGKDQ16760 1214 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 LY6KQ17RY6 165 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 INF2Q27J81 1249 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 Q4G0T1 1027 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 PRR16Q569H4 304 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 CCDC62Q6P9F0 684 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 KLHDC9Q8NEP7 349 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 SPATA33Q96N06 139 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 RIT2Q99578 217 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 TEKT3Q9BXF9 490 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 AZI2Q9H6S1 392 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 GJB4Q9NTQ9 266 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 RTEL1Q9NZ71 1219 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 PCDHGA4Q9Y5G9 962 aa8.76□□□□□ -1.01
LIMCH1-222ENST00000515847 DOCK5Q9H7D0 1870 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 A0A1W2PQ45 241 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 A0A1W2PQY0 241 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 BTBD18B2RXH4 712 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 IPO5O00410 1097 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 MEIS1O00470 390 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 SORBS3O60504 671 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 RPLP2P05387 115 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 SLC26A2P50443 739 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 NKX3-2P78367 333 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 NUCB2P80303 420 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 SEMA3FQ13275 785 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 NR5A1Q13285 461 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 KCNA10Q16322 511 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 CALCRLQ16602 461 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 GNASQ5JWF2 1037 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 TTC38Q5R3I4 469 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 CELF3Q5SZQ8 465 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 LRCH2Q5VUJ6 765 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 FAM160B1Q5W0V3 765 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 HAUS3Q68CZ6 603 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 ATL3Q6DD88 541 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 CCSAPQ6IQ19 270 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 ZNF746Q6NUN9 644 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 MIS18BP1Q6P0N0 1132 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 ERMNQ8TAM6 284 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 NEK9Q8TD19 979 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 FERMT2Q96AC1 680 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 ZNF396Q96N95 335 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 SENP6Q9GZR1 1112 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 KCNH7Q9NS40 1196 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 SLC9A2Q9UBY0 812 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 DDX41Q9UJV9 622 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 PHF24Q9UPV7 400 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 ELP1O95163 1332 aa8.75□□□□□ -1.01
LIMCH1-222ENST00000515847 A0A0U1RQG5 324 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 A6NJR5 290 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 PPFIA4O75335 1185 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 ASGR1P07306 291 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 PSAPP07602 524 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 GNAT1P11488 350 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 ITGB5P18084 799 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 SYT1P21579 422 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 ACLYP53396 1101 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 SP2Q02086 613 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 ARHGAP1Q07960 439 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 LRRC26Q2I0M4 334 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 CYP2W1Q8TAV3 490 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 OXER1Q8TDS5 423 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 AFG1LQ8WV93 481 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 CRYGNQ8WXF5 182 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 SEPT1Q8WYJ6 367 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 TNFRSF25Q93038 417 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 ATP6V0A1Q93050 837 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 FAM167AQ96KS9 214 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 MBOAT7Q96N66 472 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 MTG1Q9BT17 334 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 AGO4Q9HCK5 861 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 STARD7Q9NQZ5 370 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 EMSYQ7Z589 1322 aa8.74□□□□□ -1.01
LIMCH1-222ENST00000515847 CEP290O15078 2479 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms