RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 TGFB3P10600 412 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 MX1P20591 662 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 AVPR2P30518 371 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 BTG3Q14201 252 aaPredicted RBP19.18■□□□□ 0.66
VIM-208ENST00000497849 ATOH1Q92858 354 aaPredicted RBP19.18■□□□□ 0.66
VIM-208ENST00000497849 P2RX5Q93086 422 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 FAM227BQ96M60 508 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 EHMT1Q9H9B1 1298 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 VAT1LQ9HCJ6 419 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 SUPT16HQ9Y5B9 1047 aaKnown RBP19.18■□□□□ 0.66
VIM-208ENST00000497849 KAT6AQ92794 2004 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 NEDD4P46934 1319 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 SALL3Q9BXA9 1300 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 DGKIO75912 1065 aa19.17■□□□□ 0.66
VIM-208ENST00000497849 GLP2RO95838 553 aa19.17■□□□□ 0.66
VIM-208ENST00000497849 ITGB1P05556 798 aa19.17■□□□□ 0.66
VIM-208ENST00000497849 GHRP10912 638 aa19.17■□□□□ 0.66
VIM-208ENST00000497849 PCP11498 1178 aaKnown RBP19.17■□□□□ 0.66
VIM-208ENST00000497849 SPPL3Q8TCT6 385 aa19.17■□□□□ 0.66
VIM-208ENST00000497849 BARX2Q9UMQ3 279 aaPredicted RBP19.17■□□□□ 0.66
VIM-208ENST00000497849 USP15Q9Y4E8 981 aaPredicted RBP19.17■□□□□ 0.66
VIM-208ENST00000497849 CCDC171Q6TFL3 1326 aa19.17■□□□□ 0.66
VIM-208ENST00000497849 FAM186AA6NE01 2351 aa19.17■□□□□ 0.66
VIM-208ENST00000497849 CACNA1AO00555 2505 aa19.16■□□□□ 0.66
VIM-208ENST00000497849 DHX16O60231 1041 aaKnown RBP19.16■□□□□ 0.66
VIM-208ENST00000497849 GNAT1P11488 350 aa19.16■□□□□ 0.66
VIM-208ENST00000497849 HOXA13P31271 388 aaPredicted RBP19.16■□□□□ 0.66
VIM-208ENST00000497849 ASPRV1Q53RT3 343 aa19.16■□□□□ 0.66
VIM-208ENST00000497849 ZNF589Q86UQ0 364 aaPredicted RBP19.16■□□□□ 0.66
VIM-208ENST00000497849 LMBR1Q8WVP7 490 aa19.16■□□□□ 0.66
VIM-208ENST00000497849 PHF7Q9BWX1 381 aaPredicted RBP19.16■□□□□ 0.66
VIM-208ENST00000497849 USP26Q9BXU7 913 aa19.16■□□□□ 0.66
VIM-208ENST00000497849 TELO2Q9Y4R8 837 aa19.16■□□□□ 0.66
VIM-208ENST00000497849 MRPL42Q9Y6G3 142 aaKnown RBP19.16■□□□□ 0.66
VIM-208ENST00000497849 PLXNA4Q9HCM2 1894 aa19.16■□□□□ 0.66
VIM-208ENST00000497849 H0Y858 1186 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 PPP1R11O60927 126 aaPredicted RBP19.15■□□□□ 0.66
VIM-208ENST00000497849 NRIP1P48552 1158 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 MGAT3Q09327 533 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 LPIN1Q14693 890 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 MCMDC2Q4G0Z9 681 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 TRIM50Q86XT4 487 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 ESR2Q92731 530 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 PPP2R3CQ969Q6 453 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 EVI5LQ96CN4 794 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 RPGRIP1Q96KN7 1286 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 AMNQ9BXJ7 453 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 IRF2BPLQ9H1B7 796 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 TLR9Q9NR96 1032 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 MAP3K20Q9NYL2 800 aaKnown RBP19.15■□□□□ 0.66
VIM-208ENST00000497849 RCAN3Q9UKA8 241 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 VPS13AQ96RL7 3174 aa19.15■□□□□ 0.66
VIM-208ENST00000497849 PROB1E7EW31 1015 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 ICAM3P32942 547 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 ARHGAP4P98171 946 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 RUFY4Q6ZNE9 571 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 ASCL5Q7RTU5 278 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 RBM23Q86U06 439 aaKnown RBP19.14■□□□□ 0.65
VIM-208ENST00000497849 CRIPAKQ8N1N5 446 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 KLHL23Q8NBE8 558 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 LINC01599Q8WXQ3 324 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 GPR20Q99678 358 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 KAT14Q9H8E8 782 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 PCDHGC5Q9Y5F6 944 aa19.14■□□□□ 0.65
VIM-208ENST00000497849 NOP56O00567 594 aaKnown RBP19.13■□□□□ 0.65
VIM-208ENST00000497849 PDGFBP01127 241 aaPredicted RBP19.13■□□□□ 0.65
VIM-208ENST00000497849 PARP1P09874 1014 aaKnown RBP19.13■□□□□ 0.65
VIM-208ENST00000497849 CCND2P30279 289 aa19.13■□□□□ 0.65
VIM-208ENST00000497849 NAALADL2Q58DX5 795 aa19.13■□□□□ 0.65
VIM-208ENST00000497849 METTL7BQ6UX53 244 aa19.13■□□□□ 0.65
VIM-208ENST00000497849 POF1BQ8WVV4 589 aa19.13■□□□□ 0.65
VIM-208ENST00000497849 RNF41Q9H4P4 317 aaPredicted RBP19.13■□□□□ 0.65
VIM-208ENST00000497849 RBM10P98175 930 aaKnown RBP19.12■□□□□ 0.65
VIM-208ENST00000497849 SEMA3FQ13275 785 aa19.12■□□□□ 0.65
VIM-208ENST00000497849 CYFIP1Q7L576 1253 aa19.12■□□□□ 0.65
VIM-208ENST00000497849 STAG2Q8N3U4 1231 aa19.12■□□□□ 0.65
VIM-208ENST00000497849 SUSD6Q92537 303 aa19.12■□□□□ 0.65
VIM-208ENST00000497849 MTMR8Q96EF0 704 aa19.12■□□□□ 0.65
VIM-208ENST00000497849 LAMA4Q16363 1823 aa19.11■□□□□ 0.65
VIM-208ENST00000497849 NRCAMQ92823 1304 aa19.11■□□□□ 0.65
VIM-208ENST00000497849 KDM4AO75164 1064 aa19.11■□□□□ 0.65
VIM-208ENST00000497849 ATF7P17544 494 aaPredicted RBP19.11■□□□□ 0.65
VIM-208ENST00000497849 MRPS9P82933 396 aaKnown RBP19.11■□□□□ 0.65
VIM-208ENST00000497849 NMIQ13287 307 aaPredicted RBP19.11■□□□□ 0.65
VIM-208ENST00000497849 PTPN21Q16825 1174 aa19.11■□□□□ 0.65
VIM-208ENST00000497849 FBXO47Q5MNV8 452 aa19.11■□□□□ 0.65
VIM-208ENST00000497849 RTN4RL1Q86UN2 441 aaPredicted RBP19.11■□□□□ 0.65
VIM-208ENST00000497849 IQCA1Q86XH1 822 aa19.11■□□□□ 0.65
VIM-208ENST00000497849 CMTR2Q8IYT2 770 aaKnown RBP19.11■□□□□ 0.65
VIM-208ENST00000497849 SAMD3Q8N6K7 520 aa19.11■□□□□ 0.65
VIM-208ENST00000497849 ENAHQ8N8S7 591 aaPredicted RBP19.11■□□□□ 0.65
VIM-208ENST00000497849 VN1R2Q8NFZ6 395 aa19.11■□□□□ 0.65
VIM-208ENST00000497849 ZSCAN10Q96SZ4 725 aaPredicted RBP19.11■□□□□ 0.65
VIM-208ENST00000497849 PCDHA1Q9Y5I3 950 aa19.11■□□□□ 0.65
VIM-208ENST00000497849 SPATA31C2B4DYI2 1134 aa19.1■□□□□ 0.65
VIM-208ENST00000497849 NEDD9Q14511 834 aa19.1■□□□□ 0.65
VIM-208ENST00000497849 CCDC178Q5BJE1 867 aa19.1■□□□□ 0.65
VIM-208ENST00000497849 UTP14CQ5TAP6 766 aaKnown RBP19.1■□□□□ 0.65
VIM-208ENST00000497849 TAF2Q6P1X5 1199 aa19.1■□□□□ 0.65
VIM-208ENST00000497849 FCHSD1Q86WN1 690 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms