RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 ZSCAN10Q96SZ4 725 aaPredicted RBP15.2■□□□□ 0.02
HDAC3-213ENST00000492506 IFIH1Q9BYX4 1025 aaKnown RBP15.2■□□□□ 0.02
HDAC3-213ENST00000492506 RC3H2Q9HBD1 1191 aaKnown RBP15.2■□□□□ 0.02
HDAC3-213ENST00000492506 MAP3K20Q9NYL2 800 aaKnown RBP15.2■□□□□ 0.02
HDAC3-213ENST00000492506 ZSWIM5Q9P217 1185 aa15.2■□□□□ 0.02
HDAC3-213ENST00000492506 KMT2EQ8IZD2 1858 aa15.2■□□□□ 0.02
HDAC3-213ENST00000492506 B4E1Z4 1266 aa15.19■□□□□ 0.02
HDAC3-213ENST00000492506 ZNF213O14771 459 aa15.19■□□□□ 0.02
HDAC3-213ENST00000492506 GRM6O15303 877 aa15.19■□□□□ 0.02
HDAC3-213ENST00000492506 MBTPS2O43462 519 aa15.19■□□□□ 0.02
HDAC3-213ENST00000492506 NCK2O43639 380 aa15.19■□□□□ 0.02
HDAC3-213ENST00000492506 DHX16O60231 1041 aaKnown RBP15.19■□□□□ 0.02
HDAC3-213ENST00000492506 HOXA13P31271 388 aaPredicted RBP15.19■□□□□ 0.02
HDAC3-213ENST00000492506 SLC35G1Q2M3R5 365 aa15.19■□□□□ 0.02
HDAC3-213ENST00000492506 HERC4Q5GLZ8 1057 aaPredicted RBP15.19■□□□□ 0.02
HDAC3-213ENST00000492506 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.19■□□□□ 0.02
HDAC3-213ENST00000492506 IL17RAQ96F46 866 aa15.19■□□□□ 0.02
HDAC3-213ENST00000492506 MUTYHQ9UIF7 546 aa15.19■□□□□ 0.02
HDAC3-213ENST00000492506 MYO15AQ9UKN7 3530 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 TBX10O75333 385 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 RB1P06400 928 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 CTNNB1P35222 781 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 GTF2F1P35269 517 aaKnown RBP eCLIP15.18■□□□□ 0.02
HDAC3-213ENST00000492506 BMPR1AP36894 532 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 CLUL1Q15846 466 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 C8orf34Q49A92 452 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 FIBCD1Q8N539 461 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 APBB2Q92870 758 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 TRIM44Q96DX7 344 aaPredicted RBP15.18■□□□□ 0.02
HDAC3-213ENST00000492506 PHOX2BQ99453 314 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 UPF3BQ9BZI7 483 aaKnown RBP15.18■□□□□ 0.02
HDAC3-213ENST00000492506 MLXIPQ9HAP2 919 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 SETD4Q9NVD3 440 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 TELO2Q9Y4R8 837 aa15.18■□□□□ 0.02
HDAC3-213ENST00000492506 ZDBF2Q9HCK1 2354 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 CHRNA1P02708 482 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 MRPS9P82933 396 aaKnown RBP15.17■□□□□ 0.02
HDAC3-213ENST00000492506 SEMA3FQ13275 785 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 CAMK1Q14012 370 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 RNF135Q8IUD6 432 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 SAMD3Q8N6K7 520 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 CLP1Q92989 425 aaKnown RBP15.17■□□□□ 0.02
HDAC3-213ENST00000492506 MFSD14AQ96MC6 490 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 USP26Q9BXU7 913 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 LMAN2LQ9H0V9 348 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 PCDHA1Q9Y5I3 950 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 FRMPD4Q14CM0 1322 aa15.17■□□□□ 0.02
HDAC3-213ENST00000492506 PLXNA4Q9HCM2 1894 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 DMDP11532 3685 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 DDX11L8A8MPP1 907 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 KLRF2D3W0D1 207 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 ZBTB5O15062 677 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 LINC01565O15544 149 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 XRCC6P12956 609 aaKnown RBP eCLIP15.16■□□□□ 0.02
HDAC3-213ENST00000492506 SDSP20132 328 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 CCND2P30279 289 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 ICAM3P32942 547 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 SMAD4Q13485 552 aaKnown RBP15.16■□□□□ 0.02
HDAC3-213ENST00000492506 UTP14CQ5TAP6 766 aaKnown RBP15.16■□□□□ 0.02
HDAC3-213ENST00000492506 TRIM50Q86XT4 487 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 PRSS33Q8NF86 280 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 LMBR1Q8WVP7 490 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 EDAQ92838 391 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 ZNF689Q96CS4 500 aaPredicted RBP15.16■□□□□ 0.02
HDAC3-213ENST00000492506 POP1Q99575 1024 aaKnown RBP15.16■□□□□ 0.02
HDAC3-213ENST00000492506 GPR20Q99678 358 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 C11orf84Q9BUA3 381 aaPredicted RBP15.16■□□□□ 0.02
HDAC3-213ENST00000492506 EHMT1Q9H9B1 1298 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 MAD2L2Q9UI95 211 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 PRDM4Q9UKN5 801 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 ADGRA3Q8IWK6 1321 aa15.16■□□□□ 0.02
HDAC3-213ENST00000492506 PALM3A6NDB9 673 aaPredicted RBP15.15■□□□□ 0.02
HDAC3-213ENST00000492506 TRIM6-TRIM34B2RNG4 842 aa15.15■□□□□ 0.02
HDAC3-213ENST00000492506 SPATA31C2B4DYI2 1134 aa15.15■□□□□ 0.02
HDAC3-213ENST00000492506 MFAP1P55081 439 aaKnown RBP15.15■□□□□ 0.02
HDAC3-213ENST00000492506 ADAM15Q13444 863 aa15.15■□□□□ 0.02
HDAC3-213ENST00000492506 SEC23AQ15436 765 aa15.15■□□□□ 0.02
HDAC3-213ENST00000492506 METTL7BQ6UX53 244 aa15.15■□□□□ 0.02
HDAC3-213ENST00000492506 BMP8AQ7Z5Y6 402 aa15.15■□□□□ 0.02
HDAC3-213ENST00000492506 MSLNLQ96KJ4 702 aa15.15■□□□□ 0.02
HDAC3-213ENST00000492506 SNX27Q96L92 541 aa15.15■□□□□ 0.02
HDAC3-213ENST00000492506 INPP4AQ96PE3 977 aaPredicted RBP15.15■□□□□ 0.02
HDAC3-213ENST00000492506 GCOM1H8Y6P7 765 aaPredicted RBP15.14■□□□□ 0.01
HDAC3-213ENST00000492506 ENPP3O14638 875 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 MMP1P03956 469 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 POLR2MP0CAP2 368 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 GNAT1P11488 350 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 DNAJB1P25685 340 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 MGAT3Q09327 533 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 IER5LQ5T953 404 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 CYFIP1Q7L576 1253 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 FCHSD1Q86WN1 690 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 RILPL2Q969X0 211 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 UPF2Q9HAU5 1272 aaKnown RBP15.14■□□□□ 0.01
HDAC3-213ENST00000492506 CD207Q9UJ71 328 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 RWDD3Q9Y3V2 267 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 CACNA1HO95180 2353 aa15.14■□□□□ 0.01
HDAC3-213ENST00000492506 STXBP3O00186 592 aa15.13■□□□□ 0.01
HDAC3-213ENST00000492506 NOP56O00567 594 aaKnown RBP15.13■□□□□ 0.01
HDAC3-213ENST00000492506 DGKIO75912 1065 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms