RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	TRIM50	Q86XT4	487 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	TEX2	Q8IWB9	1127 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	USP38	Q8NB14	1042 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	AFAP1L1	Q8TED9	768 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	GPR20	Q99678	358 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	BCAS3	Q9H6U6	928 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	JPH1	Q9HDC5	661 aa	Predicted RBP	13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	SLC9A2	Q9UBY0	812 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	MSRA	Q9UJ68	235 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	UBIAD1	Q9Y5Z9	338 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	SLC4A7	Q9Y6M7	1214 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	ESYT2	A0FGR8	921 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	IQCF3	P0C7M6	154 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	SMIM10L2A	P0DMW4	78 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	SMIM10L2B	P0DMW5	78 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	SELP	P16109	830 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	ITGB5	P18084	799 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	SREBF1	P36956	1147 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	THPO	P40225	353 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	KCNJ6	P48051	423 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	PTK7	Q13308	1070 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	CEP55	Q53EZ4	464 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	LRRC8D	Q7L1W4	858 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	RASGRP4	Q8TDF6	673 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	PPM1E	Q8WY54	764 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	SEPT1	Q8WYJ6	367 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	SYMPK	Q92797	1274 aa	Known RBP	13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	C16orf70	Q9BSU1	422 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	ZMYND12	Q9H0C1	365 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	KCNH7	Q9NS40	1196 aa		13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.12	□□□□□ -0.31
CPNE1-222	ENST00000473373	VCAN	P13611	3396 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	HAS3	O00219	553 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	BACH1	O14867	736 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	ATP9A	O75110	1047 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	KCNA2	P16389	499 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	DNAJB2	P25686	324 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	NEK4	P51957	841 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	ZNF200	P98182	395 aa	Predicted RBP	13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	SET	Q01105	290 aa	Predicted RBP	13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	PKN1	Q16512	942 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	HERVK_113	Q902F9	699 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	TNPO1	Q92973	898 aa	Known RBP	13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	UIMC1	Q96RL1	719 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	SMARCAD1	Q9H4L7	1026 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	SH3GLB2	Q9NR46	395 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	ERAP1	Q9NZ08	941 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	TRPC6	Q9Y210	931 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	MICAL3	Q7RTP6	2002 aa		13.11	□□□□□ -0.31
CPNE1-222	ENST00000473373	TMEM265	A0A087WTH1	108 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	PARN	O95453	639 aa	Known RBP	13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	AR	P10275	920 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	CKB	P12277	381 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	HOXD8	P13378	290 aa	Predicted RBP	13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	CLK2	P49760	499 aa	Known RBP	13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	AK2	P54819	239 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	EVC	P57679	992 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	IGBP1	P78318	339 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	PPFIA1	Q13136	1202 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	RAB30	Q15771	203 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	NTRK3	Q16288	839 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	C16orf59	Q7L2K0	433 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	CYP2W1	Q8TAV3	490 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	TIFA	Q96CG3	184 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	ZNF577	Q9BSK1	485 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	C22orf23	Q9BZE7	217 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	RNPEP	Q9H4A4	650 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	ZNF576	Q9H609	170 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	SETD4	Q9NVD3	440 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	SAMM50	Q9Y512	469 aa		13.1	□□□□□ -0.31
CPNE1-222	ENST00000473373	PRUNE2	Q8WUY3	3088 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	GRXCR1	A8MXD5	290 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	TREH	O43280	583 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	CTSH	P09668	335 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	ATP2A2	P16615	1042 aa	Known RBP	13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	PRR16	Q569H4	304 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	TJAP1	Q5JTD0	557 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	FAM160B1	Q5W0V3	765 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	RSPH3	Q86UC2	560 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	CKAP2L	Q8IYA6	745 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	WASF1	Q92558	559 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	ZBED2	Q9BTP6	218 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	UPF2	Q9HAU5	1272 aa	Known RBP	13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	AGO4	Q9HCK5	861 aa	Known RBP	13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	NFASC	O94856	1347 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	NRCAM	Q92823	1304 aa		13.09	□□□□□ -0.31
CPNE1-222	ENST00000473373	PTPRS	Q13332	1948 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	CCDC194	A0A1B0GVG4	234 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	RSPH10B2	B2RC85	870 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	KIF28P	B7ZC32	967 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	IPO5	O00410	1097 aa	Known RBP	13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	MARCH6	O60337	910 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	RSPH10B	P0C881	870 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	PBX2	P40425	430 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	ACTR2	P61160	394 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	SCRN1	Q12765	414 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	TRIM29	Q14134	588 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	ZNF618	Q5T7W0	954 aa		13.08	□□□□□ -0.32
CPNE1-222	ENST00000473373	MIS18BP1	Q6P0N0	1132 aa		13.08	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms