RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 C7orf31Q8N865 590 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 RIT2Q99578 217 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 GDF15Q99988 308 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 ZNF577Q9BSK1 485 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 PRO3102Q9H379 93 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 TUT1Q9H6E5 874 aaKnown RBP13.45□□□□□ -0.26
VPS52-213ENST00000461743 GTF2IRD1Q9UHL9 959 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.45□□□□□ -0.26
VPS52-213ENST00000461743 MICAL3Q7RTP6 2002 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 TRIM43BA6NCK2 446 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 PITPNM1O00562 1244 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 SORBS3O60504 671 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 TIMP1P01033 207 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 RAG1P15918 1043 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 SYN1P17600 705 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 MAGEA10P43363 369 aaPredicted RBP13.44□□□□□ -0.26
VPS52-213ENST00000461743 SLC26A2P50443 739 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 RBL2Q08999 1139 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 INF2Q27J81 1249 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 FBXO18Q8NFZ0 1043 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 CAGE1Q8TC20 777 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 TNPO1Q92973 898 aaKnown RBP13.44□□□□□ -0.26
VPS52-213ENST00000461743 TRIM43Q96BQ3 446 aaPredicted RBP13.44□□□□□ -0.26
VPS52-213ENST00000461743 SMARCAD1Q9H4L7 1026 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 ERAP1Q9NZ08 941 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 PKD2L1Q9P0L9 805 aa13.44□□□□□ -0.26
VPS52-213ENST00000461743 GSTTP1A0A1W2PQM5 241 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 TBX3O15119 743 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 DHX15O43143 795 aaKnown RBP13.43□□□□□ -0.26
VPS52-213ENST00000461743 ATG7O95352 703 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 GNAT1P11488 350 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 ACTR2P61160 394 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 SP4Q02446 784 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 ORC2Q13416 577 aaPredicted RBP13.43□□□□□ -0.26
VPS52-213ENST00000461743 MFSD5Q6N075 450 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 CHRDL2Q6WN34 429 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 PIK3AP1Q6ZUJ8 805 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 PLPPR4Q7Z2D5 763 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 SH3RF1Q7Z6J0 888 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 RDM1Q8NG50 284 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 OXER1Q8TDS5 423 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 AFAP1L1Q8TED9 768 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 GBF1Q92538 1859 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 SLC5A5Q92911 643 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 NOC4LQ9BVI4 516 aaKnown RBP13.43□□□□□ -0.26
VPS52-213ENST00000461743 FOXP1Q9H334 677 aaPredicted RBP13.43□□□□□ -0.26
VPS52-213ENST00000461743 HIPK3Q9H422 1215 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 AZI2Q9H6S1 392 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 BCAS3Q9H6U6 928 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 GJB4Q9NTQ9 266 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 DDX25Q9UHL0 483 aaKnown RBP13.43□□□□□ -0.26
VPS52-213ENST00000461743 NOD1Q9Y239 953 aa13.43□□□□□ -0.26
VPS52-213ENST00000461743 TET1Q8NFU7 2136 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 LAMA3Q16787 3333 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 IGKV6D-21A0A0A0MT36 114 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 WDR64B1ANS9 1081 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 MSH4O15457 936 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 EDIL3O43854 480 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 TDP2O95551 362 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 RPLP2P05387 115 aaKnown RBP13.42□□□□□ -0.26
VPS52-213ENST00000461743 SFNP31947 248 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 JAK3P52333 1124 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 FPGSQ05932 587 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 NR5A1Q13285 461 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 BFSP2Q13515 415 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 CUL4AQ13619 759 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 PTGISQ16647 500 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 LETM2Q2VYF4 491 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 FAM160B1Q5W0V3 765 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 MIS18BP1Q6P0N0 1132 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 ETNPPLQ8TBG4 499 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 TEKT3Q9BXF9 490 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 TRPV6Q9H1D0 765 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 TRMT13Q9NUP7 481 aaKnown RBP13.42□□□□□ -0.26
VPS52-213ENST00000461743 HDAC6Q9UBN7 1215 aa13.42□□□□□ -0.26
VPS52-213ENST00000461743 NRCAMQ92823 1304 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 IGSF9BQ9UPX0 1349 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 LAMA2P24043 3122 aaKnown RBP13.41□□□□□ -0.26
VPS52-213ENST00000461743 C17orf102A2RUQ5 167 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 BTBD18B2RXH4 712 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 GAS7O60861 476 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 CAND2O75155 1236 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 PARNO95453 639 aaKnown RBP13.41□□□□□ -0.26
VPS52-213ENST00000461743 SMIM10L2AP0DMW4 78 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 SMIM10L2BP0DMW5 78 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 RFC2P35250 354 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 PTK7Q13308 1070 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 PPIGQ13427 754 aaKnown RBP eCLIP13.41□□□□□ -0.268e-9■■■■■ 27.7
VPS52-213ENST00000461743 UTP14CQ5TAP6 766 aaKnown RBP13.41□□□□□ -0.26
VPS52-213ENST00000461743 LRCH2Q5VUJ6 765 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 GDF6Q6KF10 455 aaPredicted RBP13.41□□□□□ -0.26
VPS52-213ENST00000461743 ABHD15Q6UXT9 468 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 TRIM50Q86XT4 487 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 TMEM199Q8N511 208 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 GLG1Q92896 1179 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 FAM20AQ96MK3 541 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 UBE2OQ9C0C9 1292 aaKnown RBP13.41□□□□□ -0.26
VPS52-213ENST00000461743 KCNMB3Q9NPA1 279 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 COL1A2P08123 1366 aa13.41□□□□□ -0.26
VPS52-213ENST00000461743 CCNT1O60563 726 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms