RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 NUCB1Q02818 461 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 CCDC173Q0VFZ6 552 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 CNGA3Q16281 694 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 GRAMD1BQ3KR37 738 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 SLC10A5Q5PT55 438 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 ERAP2Q6P179 960 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 RNF180Q86T96 592 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 DZIP1Q86YF9 867 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 FAM76AQ8TAV0 307 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 RABGGTAQ92696 567 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 TRERF1Q96PN7 1200 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 CARD11Q9BXL7 1154 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 PRKRIP1Q9H875 184 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 PGAP2Q9UHJ9 254 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 PARP4Q9UKK3 1724 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 PRR36Q9H6K5 1346 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 FAM83GA6ND36 823 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 CPLX1O14810 134 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 KHNYNO15037 678 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 MUSKO15146 869 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 RASA4O43374 803 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 ADCY3O60266 1144 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 HSPA1AP0DMV8 641 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 HSPA1BP0DMV9 641 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 PECAM1P16284 738 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 ITPKAP23677 461 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 MAGEA10P43363 369 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 GUCY2FP51841 1108 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 RCAN1P53805 252 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 HNRNPH2P55795 449 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 NLRP12P59046 1061 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 KBTBD12Q3ZCT8 623 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 PERM1Q5SV97 790 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 CCDC122Q5T0U0 273 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 ARMC4Q5T2S8 1044 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 PPP4R4Q6NUP7 873 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 LHFPL2Q6ZUX7 228 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 RTL10Q7L3V2 364 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 MILR1Q7Z6M3 343 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 RNF214Q8ND24 703 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 GOLGA5Q8TBA6 731 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 CLUHP3Q96NS8 147 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 NEK1Q96PY6 1258 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 OSBPL10Q9BXB5 764 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 GSX2Q9BZM3 304 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 CCDC8Q9H0W5 538 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 ZNF576Q9H609 170 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 CAAP1Q9H8G2 361 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 FANCFQ9NPI8 374 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 MRGBPQ9NV56 204 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 FBXO2Q9UK22 296 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 C2CD2Q9Y426 696 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 SPO11Q9Y5K1 396 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 EIF3AQ14152 1382 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 SPATA31A5Q5VU36 1347 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 SPATA31A7Q8IWB4 1347 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 SPATA31C2B4DYI2 1134 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 ERLIN1O75477 346 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 CSPG5O95196 566 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 ATF7P17544 494 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 PAPOLAP51003 745 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 CDR1P51861 262 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 RPS26P62854 115 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 ITIH3Q06033 890 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 MCL1Q07820 350 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 RCN1Q15293 331 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 PKN2Q16513 984 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 YOD1Q5VVQ6 348 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 CCDC144CPQ8IYA2 1237 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 KRT222Q8N1A0 295 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 MEIOBQ8N635 442 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 HAUS7Q99871 368 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 CDK19Q9BWU1 502 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 PANK2Q9BZ23 570 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 CBX8Q9HC52 389 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 TIMMDC1Q9NPL8 285 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 ZIM2Q9NZV7 527 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 SSX2IPQ9Y2D8 614 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 SNX5Q9Y5X3 404 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 GPC6Q9Y625 555 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 TULP4Q9NRJ4 1543 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 TOPAZ1Q8N9V7 1692 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 SBNO1A3KN83 1393 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 IQCA1LA6NCM1 817 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 NFKBIEO00221 500 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 TCEA3O75764 348 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 KRT18P05783 430 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 HPDP32754 393 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 ZBTB17Q13105 803 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 PPP2R5CQ13362 524 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 WDR45BQ5MNZ6 344 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 REXO1Q8N1G1 1221 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 ZSWIM2Q8NEG5 633 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 ST13P5Q8NFI4 369 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 ERMNQ8TAM6 284 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 BICD2Q8TD16 824 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 SKA1Q96BD8 255 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 CLIP3Q96DZ5 547 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 GPR101Q96P66 508 aaPredicted RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms