RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 EML1O00423 815 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 GTPBP6O43824 516 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 ATP9AO75110 1047 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 MED24O75448 989 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 RGS20O76081 388 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 SSBP05455 408 aaKnown RBP eCLIP19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 MYL1P05976 194 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 TGFB3P10600 412 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 KCNA2P16389 499 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 RGS2P41220 211 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 TYRO3Q06418 890 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 SEMA3FQ13275 785 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 NEDD9Q14511 834 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 DHX8Q14562 1220 aaKnown RBP19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 STX1AQ16623 288 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 TPH2Q8IWU9 490 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 FBXO16Q8IX29 292 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 SMAP1Q8IYB5 467 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 GRAMD1CQ8IYS0 662 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 KCTD17Q8N5Z5 321 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 RDM1Q8NG50 284 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 MORC4Q8TE76 937 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 RAD54LQ92698 747 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 DYDC2Q96IM9 177 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 VTA1Q9NP79 307 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 SLC9A2Q9UBY0 812 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 DNM3Q9UQ16 869 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 POTEFA5A3E0 1075 aa19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 DHX15O43143 795 aaKnown RBP19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 MUTP22033 750 aa19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 TTLL4Q14679 1199 aa19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 MORN1Q5T089 497 aa19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 POTEGQ6S5H5 508 aa19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 CATSPER3Q86XQ3 398 aa19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 MSL3Q8N5Y2 521 aaKnown RBP19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 SCFD2Q8WU76 684 aa19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 ERCC4Q92889 916 aaPredicted RBP19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 MAML3Q96JK9 1138 aa19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 SENP7Q9BQF6 1050 aa19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 ANO10Q9NW15 660 aa19.16■□□□□ 0.66
CCDC28B-202ENST00000421922 DOCK3Q8IZD9 2030 aa19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 DKC1O60832 514 aaKnown RBP eCLIP19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 P4HBP07237 508 aaKnown RBP19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 PRR29P0C7W0 189 aa19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 SP4Q02446 784 aa19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 CTTNQ14247 550 aaKnown RBP19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 NAALADL2Q58DX5 795 aa19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 STAMQ92783 540 aa19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 CCDC43Q96MW1 224 aaKnown RBP19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 BMP2KQ9NSY1 1161 aaPredicted RBP19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.15■□□□□ 0.66
CCDC28B-202ENST00000421922 SYNGAP1Q96PV0 1343 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 GOLGA6L3A6NEY3 463 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 SORBS3O60504 671 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 TBC1D8O95759 1140 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 PSAPP07602 524 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 UBA1P22314 1058 aaKnown RBP19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 MCM6Q14566 821 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 MIS18BP1Q6P0N0 1132 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 B3GNT9Q6UX72 402 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 CYFIP1Q7L576 1253 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 SH3RF1Q7Z6J0 888 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 BANK1Q8NDB2 785 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 APBA2Q99767 749 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 LXNQ9BS40 222 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 TINF2Q9BSI4 451 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 MLXIPQ9HAP2 919 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 RMND1Q9NWS8 449 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 RGL1Q9NZL6 768 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 PCDHA5Q9Y5H7 936 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 PCDHA10Q9Y5I2 948 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 THSD7BQ9C0I4 1608 aa19.14■□□□□ 0.65
CCDC28B-202ENST00000421922 BIN1O00499 593 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 TRPA1O75762 1119 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 GGPS1O95749 300 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 KRT18P05783 430 aaKnown RBP19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 PLA2G4BP0C869 781 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 CYP2B6P20813 491 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 PSMC4P43686 418 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 LACTBP83111 547 aaPredicted RBP19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 MDM2Q00987 491 aaPredicted RBP19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 MAMDC4Q6UXC1 1216 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 NPLOC4Q8TAT6 608 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 NACC1Q96RE7 527 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 BLZF1Q9H2G9 400 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 ZSWIM4Q9H7M6 989 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 BLOC1S4Q9NUP1 217 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 KBTBD4Q9NVX7 518 aa19.13■□□□□ 0.65
CCDC28B-202ENST00000421922 E9PMD0 336 aa19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 NOP56O00567 594 aaKnown RBP19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 BACH1O14867 736 aa19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 SPATA31C1P0DKV0 1188 aa19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 TXNP10599 105 aaKnown RBP19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 QARSP47897 775 aaKnown RBP19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 ASIC1P78348 528 aa19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 SP3Q02447 781 aa19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 ECM1Q16610 540 aa19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 TRIML1Q8N9V2 468 aa19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 ATP6V0A1Q93050 837 aa19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 HSD17B14Q9BPX1 270 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms