RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE2	YKL130C	HIS4	P00815	799 aa	Known RBP	2.17	□□□□□ -2.06
SHE2	YKL130C	ARO3	P14843	370 aa	Known RBP	2.17	□□□□□ -2.06
SHE2	YKL130C	ALG1	P16661	449 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	DAP2	P18962	818 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	RPS2	P25443	254 aa	Known RBP	2.17	□□□□□ -2.06
SHE2	YKL130C	HSP104	P31539	908 aa	Known RBP	2.17	□□□□□ -2.06
SHE2	YKL130C	SPC110	P32380	944 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	VPS17	P32913	551 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	SOR1	P35497	357 aa	Known RBP	2.17	□□□□□ -2.06
SHE2	YKL130C	MIC60	P36112	540 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	SPC34	P36131	295 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	ADH5	P38113	351 aa	Known RBP	2.17	□□□□□ -2.06
SHE2	YKL130C	RRN10	P38204	145 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	MLH1	P38920	769 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	FAU1	P40099	211 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	YIL089W	P40500	205 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	CHS6	P40955	746 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	SAS2	P40963	338 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	SHE10	P53075	577 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	YDR541C	Q03049	344 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	ADD37	Q03233	198 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	SLD5	Q03406	294 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	MSS11	Q03825	758 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	MGR3	Q04472	501 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	MDM30	Q05930	598 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	NDL1	Q06568	189 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	SOR2	Q07786	357 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	THI20	Q08224	551 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	CSR2	Q12734	1121 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	SRN2	Q99176	213 aa		2.17	□□□□□ -2.06
SHE2	YKL130C	THO2	P53552	1597 aa	Known RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	ADE4	P04046	510 aa	Known RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	CBS2	P14905	389 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	SEC62	P21825	274 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	RPI1	P23250	407 aa	Known RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	BUB3	P26449	341 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	FAA1	P30624	700 aa	Known RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	NDI1	P32340	513 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	APE2	P32454	952 aa	Known RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	NIP1	P32497	812 aa	Known RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	RSM22	P36056	628 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	PCA1	P38360	1216 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	OSH3	P38713	996 aa	Known RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	PCF11	P39081	626 aa	Predicted RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	YIR014W	P40570	242 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	2.16	□□□□□ -2.06	not detected
SHE2	YKL130C	RPA34	P47006	233 aa	Predicted RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	BRO1	P48582	844 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	GPI8	P49018	411 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	ASN2	P49090	572 aa	Known RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	YIF1	P53845	314 aa	Known RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	TDA7	P53882	636 aa	Predicted RBP	2.16	□□□□□ -2.06
SHE2	YKL130C	PNG1	Q02890	363 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	TAF12	Q03761	539 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	YDR387C	Q04162	555 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	BNA5	Q05979	453 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	VPS74	Q06385	345 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	NSE1	Q07913	336 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	YEH2	Q07950	538 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	TLG2	Q08144	397 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	REX4	Q08237	289 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	REX3	Q12090	404 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	PSY3	Q12318	242 aa		2.16	□□□□□ -2.06
SHE2	YKL130C	MDS3	P53094	1487 aa		2.15	□□□□□ -2.06
SHE2	YKL130C	COX3	P00420	269 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	TAL1	P15019	335 aa	Known RBP	2.15	□□□□□ -2.07
SHE2	YKL130C	GLN3	P18494	730 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	UBA1	P22515	1024 aa	Known RBP	2.15	□□□□□ -2.07
SHE2	YKL130C	PHO91	P27514	894 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	ACH1	P32316	526 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	SMY1	P32364	656 aa	Known RBP	2.15	□□□□□ -2.07
SHE2	YKL130C	ECM25	P32525	599 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	ECM15	P35195	104 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	AVT5	P38176	459 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	YBL028C	P38202	106 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	KAP104	P38217	918 aa	Known RBP	2.15	□□□□□ -2.07
SHE2	YKL130C	RRF1	P38771	230 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	STN1	P38960	494 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	PES4	P39684	611 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	GAT2	P40209	560 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	NAS2	P40555	220 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	MKT1	P40850	830 aa	Known RBP	2.15	□□□□□ -2.07
SHE2	YKL130C	ELP2	P42935	788 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	TRS85	P46944	698 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	PHO86	P46956	311 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	MDE1	P47095	244 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	CUE3	P53137	624 aa	Known RBP	2.15	□□□□□ -2.07
SHE2	YKL130C	PDR16	P53860	351 aa	Known RBP	2.15	□□□□□ -2.07
SHE2	YKL130C	AQR1	P53943	586 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	KTR5	P53966	522 aa	Predicted RBP	2.15	□□□□□ -2.07
SHE2	YKL130C	IRC15	Q02733	499 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	MRPL51	Q06090	140 aa	Predicted RBP	2.15	□□□□□ -2.07
SHE2	YKL130C	SYO1	Q07395	620 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	YLL056C	Q12177	298 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	YDL009C	Q12210	107 aa		2.15	□□□□□ -2.07
SHE2	YKL130C	ILV5	P06168	395 aa	Known RBP	2.14	□□□□□ -2.07
SHE2	YKL130C	YAR066W	P0CX18	203 aa		2.14	□□□□□ -2.07
SHE2	YKL130C	YHR214W	P0CX19	203 aa		2.14	□□□□□ -2.07
SHE2	YKL130C	RAD57	P25301	460 aa		2.14	□□□□□ -2.07
SHE2	YKL130C	RDS1	P25611	832 aa		2.14	□□□□□ -2.07

Retrieved 100 of 5,963 RNA–protein pairs in 17 ms