RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C SPC97P38863 823 aa5.7□□□□□ -1.5
DEF1YKL054C PLB1P39105 664 aa5.7□□□□□ -1.5
DEF1YKL054C PRM9P39551 298 aa5.7□□□□□ -1.5
DEF1YKL054C SAP1P39955 897 aaKnown RBP5.7□□□□□ -1.5
DEF1YKL054C GAT2P40209 560 aa5.7□□□□□ -1.5
DEF1YKL054C ERG26P53199 349 aaKnown RBP5.7□□□□□ -1.5
DEF1YKL054C YNL260CP53846 198 aa5.7□□□□□ -1.5
DEF1YKL054C ROT1Q03691 256 aa5.7□□□□□ -1.5
DEF1YKL054C COX20Q04935 205 aa5.7□□□□□ -1.5
DEF1YKL054C RXT3Q07458 294 aa5.7□□□□□ -1.5
DEF1YKL054C YOS9Q99220 542 aa5.7□□□□□ -1.5
DEF1YKL054C MAS1P10507 462 aa5.7□□□□□ -1.5
DEF1YKL054C STE4P18851 423 aa5.7□□□□□ -1.5
DEF1YKL054C RPS5P26783 225 aaKnown RBP5.7□□□□□ -1.5
DEF1YKL054C ITR1P30605 584 aa5.7□□□□□ -1.5
DEF1YKL054C CYM1P32898 989 aa5.7□□□□□ -1.5
DEF1YKL054C OMA1P36163 345 aa5.7□□□□□ -1.5
DEF1YKL054C YHR182WP38870 785 aa5.7□□□□□ -1.5
DEF1YKL054C CCT2P39076 527 aaKnown RBP5.7□□□□□ -1.5
DEF1YKL054C YPS6P40583 537 aa5.7□□□□□ -1.5
DEF1YKL054C YDL186WP48568 277 aa5.7□□□□□ -1.5
DEF1YKL054C AMA1P50082 593 aa5.7□□□□□ -1.5
DEF1YKL054C YIP4P53093 235 aa5.7□□□□□ -1.5
DEF1YKL054C NOP12Q08208 459 aaKnown RBP5.7□□□□□ -1.5
DEF1YKL054C SPO24Q3E752 67 aa5.7□□□□□ -1.5
DEF1YKL054C LAG2Q92325 660 aa5.7□□□□□ -1.5
DEF1YKL054C ATP10P18496 279 aa5.69□□□□□ -1.5
DEF1YKL054C YCP4P25349 247 aaKnown RBP5.69□□□□□ -1.5
DEF1YKL054C GDA1P32621 518 aa5.69□□□□□ -1.5
DEF1YKL054C NRP1P32770 719 aaKnown RBP RIP-Chip data5.69□□□□□ -1.5not detected
DEF1YKL054C OCT1P35999 772 aa5.69□□□□□ -1.5
DEF1YKL054C OLA1P38219 394 aaKnown RBP5.69□□□□□ -1.5
DEF1YKL054C VBA2P38358 474 aaKnown RBP5.69□□□□□ -1.5
DEF1YKL054C YML053CQ04978 212 aa5.69□□□□□ -1.5
DEF1YKL054C SNT309Q06091 175 aaPredicted RBP5.69□□□□□ -1.5
DEF1YKL054C TDH2P00358 332 aaKnown RBP5.68□□□□□ -1.5
DEF1YKL054C TDH3P00359 332 aaKnown RBP RIP-Chip data5.68□□□□□ -1.5not detected
DEF1YKL054C RPS16AP0CX51 143 aaKnown RBP5.68□□□□□ -1.5
DEF1YKL054C RPS16BP0CX52 143 aaKnown RBP5.68□□□□□ -1.5
DEF1YKL054C PRP16P15938 1071 aaPredicted RBP5.68□□□□□ -1.5
DEF1YKL054C MET16P18408 261 aaPredicted RBP5.68□□□□□ -1.5
DEF1YKL054C RPC25P35718 212 aa5.68□□□□□ -1.5
DEF1YKL054C EFM2P38347 419 aa5.68□□□□□ -1.5
DEF1YKL054C RTT107P38850 1070 aa5.68□□□□□ -1.5
DEF1YKL054C PRP39P39682 629 aaKnown RBP5.68□□□□□ -1.5
DEF1YKL054C LOH1P47055 219 aa5.68□□□□□ -1.5
DEF1YKL054C DIP5P53388 608 aa5.68□□□□□ -1.5
DEF1YKL054C RLI1Q03195 608 aaKnown RBP5.68□□□□□ -1.5
DEF1YKL054C YMR087WQ04299 284 aa5.68□□□□□ -1.5
DEF1YKL054C LSP1Q12230 341 aaKnown RBP5.68□□□□□ -1.5
DEF1YKL054C CDC21P06785 304 aa5.68□□□□□ -1.5
DEF1YKL054C RPL18AP0CX49 186 aaKnown RBP5.68□□□□□ -1.5
DEF1YKL054C RPL18BP0CX50 186 aaKnown RBP5.68□□□□□ -1.5
DEF1YKL054C SOR1P35497 357 aaKnown RBP5.68□□□□□ -1.5
DEF1YKL054C PPS1P38148 807 aa5.68□□□□□ -1.5
DEF1YKL054C ANS1P38832 159 aa5.68□□□□□ -1.5
DEF1YKL054C TFG2P41896 400 aaPredicted RBP5.68□□□□□ -1.5
DEF1YKL054C YJL118WP47022 219 aa5.68□□□□□ -1.5
DEF1YKL054C MUP1P50276 574 aa5.68□□□□□ -1.5
DEF1YKL054C YNL247WP53852 767 aaKnown RBP5.68□□□□□ -1.5
DEF1YKL054C SOR2Q07786 357 aa5.68□□□□□ -1.5
DEF1YKL054C YPR022CQ12139 1133 aa5.68□□□□□ -1.5
DEF1YKL054C RNH203Q12338 110 aa5.68□□□□□ -1.5
DEF1YKL054C LAM4P38800 1345 aa5.67□□□□□ -1.5
DEF1YKL054C FRS2P15625 503 aaKnown RBP5.67□□□□□ -1.5
DEF1YKL054C GSY2P27472 705 aa5.67□□□□□ -1.5
DEF1YKL054C AIM29P36154 155 aa5.67□□□□□ -1.5
DEF1YKL054C RRP4P38792 359 aaKnown RBP5.67□□□□□ -1.5
DEF1YKL054C BET4Q00618 327 aa5.67□□□□□ -1.5
DEF1YKL054C SLT2Q00772 484 aa5.67□□□□□ -1.5
DEF1YKL054C YMR310CQ04867 317 aaPredicted RBP5.67□□□□□ -1.5
DEF1YKL054C YKL033W-AQ86ZR7 236 aa5.67□□□□□ -1.5
DEF1YKL054C GDH1P07262 454 aaKnown RBP5.67□□□□□ -1.5
DEF1YKL054C RGT1P32862 1170 aa5.67□□□□□ -1.5
DEF1YKL054C TCM62P38228 572 aaKnown RBP5.67□□□□□ -1.5
DEF1YKL054C PAC11P40960 533 aa5.67□□□□□ -1.5
DEF1YKL054C PHO86P46956 311 aa5.67□□□□□ -1.5
DEF1YKL054C YNL146WP53906 100 aa5.67□□□□□ -1.5
DEF1YKL054C PDR8Q06149 701 aa5.67□□□□□ -1.5
DEF1YKL054C MRPL35Q06678 367 aa5.67□□□□□ -1.5
DEF1YKL054C LOT6Q07923 191 aa5.67□□□□□ -1.5
DEF1YKL054C RAX1Q08760 435 aa5.67□□□□□ -1.5
DEF1YKL054C GET4Q12125 312 aa5.67□□□□□ -1.5
DEF1YKL054C YMR085WP0CF18 432 aa5.66□□□□□ -1.5
DEF1YKL054C MATALPHA1P0CY06 175 aa5.66□□□□□ -1.5
DEF1YKL054C HMLALPHA1P0CY07 175 aa5.66□□□□□ -1.5
DEF1YKL054C RRN10P38204 145 aa5.66□□□□□ -1.5
DEF1YKL054C KAP104P38217 918 aaKnown RBP5.66□□□□□ -1.5
DEF1YKL054C FET3P38993 636 aa5.66□□□□□ -1.5
DEF1YKL054C RMR1P53060 241 aa5.66□□□□□ -1.5
DEF1YKL054C MYO5Q04439 1219 aaKnown RBP5.66□□□□□ -1.5
DEF1YKL054C HRD3Q05787 833 aa5.66□□□□□ -1.5
DEF1YKL054C ECM30Q06673 1274 aa5.66□□□□□ -1.5
DEF1YKL054C YDL086WQ07505 273 aa5.66□□□□□ -1.5
DEF1YKL054C IRC13Q08630 104 aa5.66□□□□□ -1.5
DEF1YKL054C YDL177CQ12257 170 aa5.66□□□□□ -1.5
DEF1YKL054C CHS1P08004 1131 aa5.66□□□□□ -1.5
DEF1YKL054C ACH1P32316 526 aa5.66□□□□□ -1.5
DEF1YKL054C COS9P36034 407 aa5.66□□□□□ -1.5
DEF1YKL054C PMT5P52867 743 aa5.66□□□□□ -1.5
Retrieved 100 of 5,963 RNA–protein pairs in 26.6 ms