RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W ISC1P40015 477 aaKnown RBP5.34□□□□□ -1.55
PRP40YKL012W MEP1P40260 492 aa5.34□□□□□ -1.55
PRP40YKL012W RPA34P47006 233 aaPredicted RBP5.34□□□□□ -1.55
PRP40YKL012W IRC15Q02733 499 aa5.34□□□□□ -1.55
PRP40YKL012W RBA50Q04418 439 aa5.34□□□□□ -1.55
PRP40YKL012W MRPL1Q04599 285 aa5.34□□□□□ -1.55
PRP40YKL012W IPK1Q06667 281 aa5.34□□□□□ -1.55
PRP40YKL012W YEH2Q07950 538 aa5.34□□□□□ -1.55
PRP40YKL012W YDL009CQ12210 107 aa5.34□□□□□ -1.55
PRP40YKL012W SIN3P22579 1536 aa5.34□□□□□ -1.55
PRP40YKL012W NFT1P0CE68 1218 aa5.34□□□□□ -1.56
PRP40YKL012W CTR86P25355 563 aa5.34□□□□□ -1.56
PRP40YKL012W ERG1P32476 496 aaKnown RBP5.34□□□□□ -1.56
PRP40YKL012W SPC97P38863 823 aa5.34□□□□□ -1.56
PRP40YKL012W VPS52P39904 641 aa5.34□□□□□ -1.56
PRP40YKL012W ELP2P42935 788 aa5.34□□□□□ -1.56
PRP40YKL012W UTP6Q02354 440 aaKnown RBP5.34□□□□□ -1.56
PRP40YKL012W PNG1Q02890 363 aa5.34□□□□□ -1.56
PRP40YKL012W YLL056CQ12177 298 aa5.34□□□□□ -1.56
PRP40YKL012W SFG1Q12507 346 aa5.34□□□□□ -1.56
PRP40YKL012W SCH9P11792 824 aaKnown RBP5.33□□□□□ -1.56
PRP40YKL012W RDS1P25611 832 aa5.33□□□□□ -1.56
PRP40YKL012W NRP1P32770 719 aaKnown RBP RIP-Chip data5.33□□□□□ -1.56not detected
PRP40YKL012W RRP3P38712 501 aaKnown RBP5.33□□□□□ -1.56
PRP40YKL012W MNL1P38888 796 aa5.33□□□□□ -1.56
PRP40YKL012W BRO1P48582 844 aa5.33□□□□□ -1.56
PRP40YKL012W YIP1P53039 248 aa5.33□□□□□ -1.56
PRP40YKL012W URH1Q04179 340 aa5.33□□□□□ -1.56
PRP40YKL012W VPS74Q06385 345 aa5.33□□□□□ -1.56
PRP40YKL012W NOP6Q07623 225 aaKnown RBP5.33□□□□□ -1.56
PRP40YKL012W RTC5Q12108 567 aaKnown RBP5.33□□□□□ -1.56
PRP40YKL012W RAD57P25301 460 aa5.32□□□□□ -1.56
PRP40YKL012W CYS4P32582 507 aaKnown RBP5.32□□□□□ -1.56
PRP40YKL012W YSC83P32792 385 aa5.32□□□□□ -1.56
PRP40YKL012W SUR1P33300 382 aa5.32□□□□□ -1.56
PRP40YKL012W SRB2P34162 210 aa5.32□□□□□ -1.56
PRP40YKL012W FRE2P36033 711 aa5.32□□□□□ -1.56
PRP40YKL012W QDR3P38227 689 aa5.32□□□□□ -1.56
PRP40YKL012W PAC11P40960 533 aa5.32□□□□□ -1.56
PRP40YKL012W MDV1P47025 714 aa5.32□□□□□ -1.56
PRP40YKL012W GPI15P53961 229 aa5.32□□□□□ -1.56
PRP40YKL012W RLI1Q03195 608 aaKnown RBP5.32□□□□□ -1.56
PRP40YKL012W SNT309Q06091 175 aaPredicted RBP5.32□□□□□ -1.56
PRP40YKL012W REX4Q08237 289 aa5.32□□□□□ -1.56
PRP40YKL012W THO2P53552 1597 aaKnown RBP5.32□□□□□ -1.56
PRP40YKL012W SSK2P53599 1579 aa5.32□□□□□ -1.56
PRP40YKL012W ILV5P06168 395 aaKnown RBP5.32□□□□□ -1.56
PRP40YKL012W CDC21P06785 304 aa5.32□□□□□ -1.56
PRP40YKL012W KAP104P38217 918 aaKnown RBP5.32□□□□□ -1.56
PRP40YKL012W INM1P38710 295 aa5.32□□□□□ -1.56
PRP40YKL012W OSW5P40219 148 aa5.32□□□□□ -1.56
PRP40YKL012W YIR016WP40572 265 aa5.32□□□□□ -1.56
PRP40YKL012W BNA3P47039 444 aaKnown RBP5.32□□□□□ -1.56
PRP40YKL012W CHS1P08004 1131 aa5.31□□□□□ -1.56
PRP40YKL012W YFL068WP0CX99 160 aa5.31□□□□□ -1.56
PRP40YKL012W YLL066W-AP0CY00 160 aa5.31□□□□□ -1.56
PRP40YKL012W YLL067W-AP0CY01 160 aa5.31□□□□□ -1.56
PRP40YKL012W RSM22P36056 628 aa5.31□□□□□ -1.56
PRP40YKL012W RTT107P38850 1070 aa5.31□□□□□ -1.56
PRP40YKL012W YIR014WP40570 242 aa5.31□□□□□ -1.56
PRP40YKL012W AZF1P41696 914 aa5.31□□□□□ -1.56
PRP40YKL012W HMS2P47175 358 aa5.31□□□□□ -1.56
PRP40YKL012W YDR415CQ04033 374 aaPredicted RBP5.31□□□□□ -1.56
PRP40YKL012W ATG34Q12292 412 aa5.31□□□□□ -1.56
PRP40YKL012W STE3P06783 470 aa5.3□□□□□ -1.56
PRP40YKL012W SIP2P34164 415 aaKnown RBP5.3□□□□□ -1.56
PRP40YKL012W YCR041WP37265 110 aa5.3□□□□□ -1.56
PRP40YKL012W RIM2P38127 377 aa5.3□□□□□ -1.56
PRP40YKL012W MSG5P38590 489 aa5.3□□□□□ -1.56
PRP40YKL012W STP2P38704 541 aa5.3□□□□□ -1.56
PRP40YKL012W PCL7P40186 285 aa5.3□□□□□ -1.56
PRP40YKL012W MPP10P47083 593 aaKnown RBP5.3□□□□□ -1.56
PRP40YKL012W MLH2Q07980 695 aa5.3□□□□□ -1.56
PRP40YKL012W SKI7Q08491 747 aaPredicted RBP5.3□□□□□ -1.56
PRP40YKL012W ORT1Q12375 292 aa5.3□□□□□ -1.56
PRP40YKL012W IMA3P0CW40 589 aa5.29□□□□□ -1.56
PRP40YKL012W IMA4P0CW41 589 aa5.29□□□□□ -1.56
PRP40YKL012W YAR066WP0CX18 203 aa5.29□□□□□ -1.56
PRP40YKL012W YHR214WP0CX19 203 aa5.29□□□□□ -1.56
PRP40YKL012W LYS1P38998 373 aaRIP-Chip data5.29□□□□□ -1.56not detected
PRP40YKL012W YER079WP40052 210 aaKnown RBP5.29□□□□□ -1.56
PRP40YKL012W PRP3Q03338 469 aaPredicted RBP5.29□□□□□ -1.56
PRP40YKL012W IMA2Q08295 589 aa5.29□□□□□ -1.56
PRP40YKL012W SGT1Q08446 395 aa5.29□□□□□ -1.56
PRP40YKL012W MDY2Q12285 212 aa5.29□□□□□ -1.56
PRP40YKL012W GLN3P18494 730 aa5.29□□□□□ -1.56
PRP40YKL012W YCR100CP25606 316 aa5.29□□□□□ -1.56
PRP40YKL012W GWT1P47026 490 aa5.29□□□□□ -1.56
PRP40YKL012W FRE4P53746 719 aa5.29□□□□□ -1.56
PRP40YKL012W PRM1P53835 661 aa5.29□□□□□ -1.56
PRP40YKL012W STP1Q00947 519 aa5.29□□□□□ -1.56
PRP40YKL012W RRB1Q04225 511 aaKnown RBP5.29□□□□□ -1.56
PRP40YKL012W RMD5Q12508 421 aa5.29□□□□□ -1.56
PRP40YKL012W PCH2P38126 564 aa5.28□□□□□ -1.56
PRP40YKL012W SPP381P38282 291 aaPredicted RBP5.28□□□□□ -1.56
PRP40YKL012W YDR089WP38966 869 aa5.28□□□□□ -1.56
PRP40YKL012W PCI8P40512 444 aa5.28□□□□□ -1.56
PRP40YKL012W MPS2P53159 387 aa5.28□□□□□ -1.56
PRP40YKL012W RTT102P53330 157 aa5.28□□□□□ -1.56
PRP40YKL012W ODC1Q03028 310 aa5.28□□□□□ -1.56
Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms