RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
VPS29	YHR012W	ARC1	P46672	376 aa	Known RBP	4.57	□□□□□ -1.68
VPS29	YHR012W	YGL176C	P46945	554 aa		4.57	□□□□□ -1.68
VPS29	YHR012W	GTR2	P53290	341 aa		4.57	□□□□□ -1.68
VPS29	YHR012W	GOR1	P53839	350 aa		4.57	□□□□□ -1.68
VPS29	YHR012W	SLM2	P53955	656 aa		4.57	□□□□□ -1.68
VPS29	YHR012W	GIP3	Q03016	1276 aa		4.57	□□□□□ -1.68
VPS29	YHR012W	PNP1	Q05788	311 aa		4.57	□□□□□ -1.68
VPS29	YHR012W	PDR8	Q06149	701 aa		4.57	□□□□□ -1.68
VPS29	YHR012W	RIF2	Q06208	395 aa		4.57	□□□□□ -1.68
VPS29	YHR012W	CYK3	Q07533	885 aa		4.57	□□□□□ -1.68
VPS29	YHR012W	YOR376W	Q08900	122 aa		4.57	□□□□□ -1.68
VPS29	YHR012W	RPP1A	P05318	106 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS29	YHR012W	ILV2	P07342	687 aa	Known RBP	4.56	□□□□□ -1.68
VPS29	YHR012W	RPO26	P20435	155 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	SPB1	P25582	841 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS29	YHR012W	ZIP1	P31111	875 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	DOA1	P36037	715 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	MUD2	P36084	527 aa	Known RBP	4.56	□□□□□ -1.68
VPS29	YHR012W	FMP52	P40008	231 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	TPA1	P40032	644 aa	Known RBP	4.56	□□□□□ -1.68
VPS29	YHR012W	VRG4	P40107	337 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	SMX2	P40204	77 aa	Known RBP	4.56	□□□□□ -1.68
VPS29	YHR012W	MET18	P40469	1032 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	SEC27	P41811	889 aa	Known RBP	4.56	□□□□□ -1.68
VPS29	YHR012W	MDV1	P47025	714 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	APS3	P47064	194 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	PRP31	P49704	494 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS29	YHR012W	SEH1	P53011	349 aa	Known RBP	4.56	□□□□□ -1.68
VPS29	YHR012W	BIO4	P53630	237 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	YSA1	Q01976	231 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	OAZ1	Q02803	292 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	YML131W	Q03102	365 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	YDR209C	Q03480	137 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	SWF1	Q04629	336 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	YPS7	Q06325	596 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	YPR172W	Q06608	200 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	YOL019W	Q08157	551 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	MCH5	Q08777	521 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	YLR053C	Q12026	108 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	COX17	Q12287	69 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	YPR064W	Q12492	139 aa		4.56	□□□□□ -1.68
VPS29	YHR012W	TY4B-P	A0A0B7P3V8	1104 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	HXK2	P04807	486 aa	Known RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	PHO2	P07269	559 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	ARD1	P07347	238 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	HSC82	P15108	705 aa	Known RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	ART10	P18634	518 aa	Known RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	VPS33	P20795	691 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	YCL042W	P25572	119 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	ILV6	P25605	309 aa	Known RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	MKK1	P32490	508 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	RRN3	P36070	627 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	BET3	P36149	193 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	MRPL16	P38064	232 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	OM14	P38325	134 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	PHO89	P38361	574 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	RPS26A	P39938	119 aa	Known RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	RPS26B	P39939	119 aa	Known RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	YIL067C	P40514	678 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	FKH2	P41813	862 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	BAP3	P41815	604 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	FAR3	P46671	204 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	PRY1	P47032	299 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	LIA1	P47120	325 aa	Known RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	BPL1	P48445	690 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	RAD17	P48581	401 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	HSV2	P50079	448 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	NOP19	P53317	196 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	BSC5	P53755	489 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	YPL071C	Q02864	156 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	RRB1	Q04225	511 aa	Known RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	RQC1	Q05468	723 aa	Known RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	YPR174C	Q06616	221 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	YTM1	Q12024	460 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS29	YHR012W	YOS9	Q99220	542 aa		4.55	□□□□□ -1.68
VPS29	YHR012W	RPS17A	P02407	136 aa	Known RBP	4.54	□□□□□ -1.68
VPS29	YHR012W	ARG4	P04076	463 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS29	YHR012W	RPS17B	P14127	136 aa	Known RBP	4.54	□□□□□ -1.68
VPS29	YHR012W	SLM5	P25345	492 aa	Known RBP	4.54	□□□□□ -1.68
VPS29	YHR012W	ATG15	P25641	520 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	RIM2	P38127	377 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	SEA4	P38164	1038 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	BNA4	P38169	460 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	SAP1	P39955	897 aa	Known RBP	4.54	□□□□□ -1.68
VPS29	YHR012W	SCS2	P40075	244 aa	Known RBP	4.54	□□□□□ -1.68
VPS29	YHR012W	PMT4	P46971	762 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	AIM22	P47051	409 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	URB2	P47108	1174 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	STE24	P47154	453 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	YPT32	P51996	222 aa	Known RBP	4.54	□□□□□ -1.68
VPS29	YHR012W	AIF1	P52923	378 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	RPN14	P53196	417 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	UBX4	P54730	416 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	SDH1	Q00711	640 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	MET31	Q03081	177 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	GAS3	Q03655	524 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	GPB1	Q08886	897 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	YLR049C	Q12110	428 aa		4.54	□□□□□ -1.68
VPS29	YHR012W	MDM32	Q12171	622 aa		4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 21.9 ms