RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 SIP14410 1827 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 PNMA6FA0A0J9YX94 578 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 CYP21A2P08686 494 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 ICAM3P32942 547 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 SLC35G1Q2M3R5 365 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 GNPTABQ3T906 1256 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 LEXMQ3ZCV2 418 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 TMEM31Q5JXX7 168 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 FAM117BQ6P1L5 589 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 FCHSD1Q86WN1 690 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 HOMER1Q86YM7 354 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 FBXO22Q8NEZ5 403 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 PIGSQ96S52 555 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 USP26Q9BXU7 913 aa14.48□□□□□ -0.09
TRIM28-212ENST00000597995 ERICH2A1L162 156 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 NOP56O00567 594 aaKnown RBP14.47□□□□□ -0.09
TRIM28-212ENST00000597995 SORBS3O60504 671 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 GPR37L1O60883 481 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 LGALS2P05162 132 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 SMIM10L2AP0DMW4 78 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 SMIM10L2BP0DMW5 78 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 GNAT1P11488 350 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 NEDD9Q14511 834 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 METTL7BQ6UX53 244 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 MYOCDQ8IZQ8 938 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 SEPT8Q92599 483 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 GPKOWQ92917 476 aaPredicted RBP eCLIP14.47□□□□□ -0.09
TRIM28-212ENST00000597995 TOP1MTQ969P6 601 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 INPP4AQ96PE3 977 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-212ENST00000597995 C17orf80Q9BSJ5 609 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 RNPEPQ9H4A4 650 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 U3KPZ7 1027 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-212ENST00000597995 MICAL3Q7RTP6 2002 aa14.47□□□□□ -0.09
TRIM28-212ENST00000597995 FRMPD4Q14CM0 1322 aa14.46□□□□□ -0.09
TRIM28-212ENST00000597995 BAZ2BQ9UIF8 2168 aaKnown RBP14.46□□□□□ -0.09
TRIM28-212ENST00000597995 SPATA31C2B4DYI2 1134 aa14.46□□□□□ -0.09
TRIM28-212ENST00000597995 PI4K2BG5E9Z4 385 aa14.46□□□□□ -0.09
TRIM28-212ENST00000597995 IFIT3O14879 490 aaKnown RBP14.46□□□□□ -0.09
TRIM28-212ENST00000597995 TREHO43280 583 aa14.46□□□□□ -0.09
TRIM28-212ENST00000597995 CYTH3O43739 400 aa14.46□□□□□ -0.09
TRIM28-212ENST00000597995 MRPS9P82933 396 aaKnown RBP14.46□□□□□ -0.09
TRIM28-212ENST00000597995 TROAPQ12815 778 aa14.46□□□□□ -0.09
TRIM28-212ENST00000597995 PTPROQ16827 1216 aa14.46□□□□□ -0.09
TRIM28-212ENST00000597995 RUFY2Q8WXA3 655 aa14.46□□□□□ -0.09
TRIM28-212ENST00000597995 MRPL38Q96DV4 380 aaKnown RBP14.46□□□□□ -0.09
TRIM28-212ENST00000597995 HCN4Q9Y3Q4 1203 aa14.46□□□□□ -0.09
TRIM28-212ENST00000597995 FIBPO43427 364 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 KCNA5P22460 613 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 SART3Q15020 963 aaKnown RBP14.45□□□□□ -0.1
TRIM28-212ENST00000597995 PUS10Q3MIT2 529 aaKnown RBP14.45□□□□□ -0.1
TRIM28-212ENST00000597995 EPC2Q52LR7 807 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 FAM26DQ5JW98 314 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 FAM178BQ8IXR5 827 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 APBB2Q92870 758 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 MAP4K1Q92918 833 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 ZFP91Q96JP5 570 aaPredicted RBP14.45□□□□□ -0.1
TRIM28-212ENST00000597995 YME1L1Q96TA2 773 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 GPR20Q99678 358 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 BCAS3Q9H6U6 928 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 CD320Q9NPF0 282 aa14.45□□□□□ -0.1
TRIM28-212ENST00000597995 H3BNC9 293 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 ADAM17P78536 824 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 SEMA3FQ13275 785 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 COL9A3Q14050 684 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-212ENST00000597995 WTAPQ15007 396 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 TIGD5Q53EQ6 642 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 XRRA1Q6P2D8 792 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 CYFIP1Q7L576 1253 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 RALYLQ86SE5 291 aaKnown RBP14.44□□□□□ -0.1
TRIM28-212ENST00000597995 NCOA7Q8NI08 942 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-212ENST00000597995 KHSRPQ92945 711 aaKnown RBP eCLIP14.44□□□□□ -0.1
TRIM28-212ENST00000597995 SENP7Q9BQF6 1050 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 SENP2Q9HC62 589 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 SETD4Q9NVD3 440 aa14.44□□□□□ -0.1
TRIM28-212ENST00000597995 ZNF215Q9UL58 517 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-212ENST00000597995 COL4A6Q14031 1691 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-212ENST00000597995 GRXCR2A6NFK2 248 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 E7EWF7 191 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 SMARCA1P28370 1054 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 HOXD11P31277 338 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-212ENST00000597995 PCNX4Q63HM2 1172 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 CENPQQ7L2Z9 268 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-212ENST00000597995 CATIPQ7Z7H3 387 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 RPAINQ86UA6 219 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 TMEM192Q8IY95 271 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 GJD3Q8N144 294 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 GIMAP8Q8ND71 665 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-212ENST00000597995 NEK9Q8TD19 979 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 MAP3K14Q99558 947 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 LSG1Q9H089 658 aaKnown RBP14.43□□□□□ -0.1
TRIM28-212ENST00000597995 C11orf16Q9NQ32 467 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 RTEL1Q9NZ71 1219 aa14.43□□□□□ -0.1
TRIM28-212ENST00000597995 RBM8AQ9Y5S9 174 aaKnown RBP14.43□□□□□ -0.1
TRIM28-212ENST00000597995 NRCAMQ92823 1304 aa14.42□□□□□ -0.1
TRIM28-212ENST00000597995 PIK3CDO00329 1044 aa14.42□□□□□ -0.1
TRIM28-212ENST00000597995 CTSHP09668 335 aa14.42□□□□□ -0.1
TRIM28-212ENST00000597995 ANTXR2P58335 489 aa14.42□□□□□ -0.1
TRIM28-212ENST00000597995 GPM6BQ13491 265 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms