RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 PTPN11Q06124 597 aaPredicted RBP11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 BFSP2Q13515 415 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 GNPTABQ3T906 1256 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 ZNF618Q5T7W0 954 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 JAKMIP3Q5VZ66 844 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 BLOC1S2Q6QNY1 142 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 LRRC8DQ7L1W4 858 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 NLRX1Q86UT6 975 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 PHKBQ93100 1093 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 GPR20Q99678 358 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 C16orf70Q9BSU1 422 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 KATNAL1Q9BW62 490 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 OSBPL7Q9BZF2 842 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 MTIF3Q9H2K0 278 aaKnown RBP11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 NCOA5Q9HCD5 579 aaKnown RBP11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 FRMPD4Q14CM0 1322 aa11.83□□□□□ -0.52
SHKBP1-210ENST00000595874 PTPRSQ13332 1948 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 C17orf102A2RUQ5 167 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 SMCO2A6NFE2 343 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 H3BRB1 525 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 STXBP3O00186 592 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 NBNO60934 754 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 ACTN1P12814 892 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 ITGB5P18084 799 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 HSPA4P34932 840 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 THPOP40225 353 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 ADCY7P51828 1080 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 DEFB103AP81534 67 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 ARHGAP4P98171 946 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 STK3Q13188 491 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 KRT32Q14532 448 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 GPNMBQ14956 572 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 PCNX4Q63HM2 1172 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 PPP2R2DQ66LE6 453 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 KCNV1Q6PIU1 500 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 SGMS1Q86VZ5 419 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 CCDC155Q8N6L0 562 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 CYP2W1Q8TAV3 490 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 ATP6V0A1Q93050 837 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 EMID1Q96A84 441 aaPredicted RBP11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 INPP4AQ96PE3 977 aaPredicted RBP11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 MTA3Q9BTC8 594 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 SEZ6LQ9BYH1 1024 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 MAF1Q9H063 256 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 TUT1Q9H6E5 874 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 SLC28A3Q9HAS3 691 aa11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 RBM28Q9NW13 759 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-210ENST00000595874 LAMA3Q16787 3333 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 TET1Q8NFU7 2136 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 CA3P07451 260 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 ARP10275 920 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 SELPP16109 830 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 IBSPP21815 317 aaPredicted RBP11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 RPS6KB1P23443 525 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 SMARCA1P28370 1054 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 TCF7P36402 384 aaPredicted RBP11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 FUT2Q10981 343 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 ADGRE1Q14246 886 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 NEDD9Q14511 834 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 TRMT1LQ7Z2T5 733 aaKnown RBP11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 SAMD3Q8N6K7 520 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 RASGRP4Q8TDF6 673 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 GAS2L1Q99501 681 aaPredicted RBP11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 ANO3Q9BYT9 981 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 RNPEPQ9H4A4 650 aa11.81□□□□□ -0.52
SHKBP1-210ENST00000595874 LCHNA4D1U4 455 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 PIK3CDO00329 1044 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 PPFIA4O75335 1185 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 KCNA2P16389 499 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 ICAM3P32942 547 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 ZNF76P36508 570 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 KCNJ6P48051 423 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 PTK7Q13308 1070 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 MTMR1Q13613 665 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 MBTPS1Q14703 1052 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 RAB30Q15771 203 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 TRIM71Q2Q1W2 868 aaKnown RBP11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 KRT40Q6A162 431 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 METTL7BQ6UX53 244 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 RUFY4Q6ZNE9 571 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 SESTD1Q86VW0 696 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 ZBED2Q9BTP6 218 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 SLC26A6Q9BXS9 759 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 UPF3BQ9BZI7 483 aaKnown RBP11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 MTUS1Q9ULD2 1270 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 UBIAD1Q9Y5Z9 338 aa11.8□□□□□ -0.52
SHKBP1-210ENST00000595874 GSTTP1A0A1W2PQM5 241 aa11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 EPOPA6NHQ4 379 aa11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 PITPNM1O00562 1244 aa11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 TGFB3P10600 412 aa11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 RFC2P35250 354 aa11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 WDR5P61964 334 aaKnown RBP11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 TSGA10IPQ3SY00 556 aa11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 TRAF7Q6Q0C0 670 aa11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 CAGE1Q8TC20 777 aa11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 AFAP1L1Q8TED9 768 aa11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 TRAPPC12Q8WVT3 735 aa11.79□□□□□ -0.52
SHKBP1-210ENST00000595874 ARNTL2Q8WYA1 636 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms