RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 MCMDC2Q4G0Z9 681 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 HERC4Q5GLZ8 1057 aaPredicted RBP12.88□□□□□ -0.35
VPS4B-202ENST00000588059 DGKHQ86XP1 1220 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 ATP6V0A1Q93050 837 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 MFSD14AQ96MC6 490 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 POP1Q99575 1024 aaKnown RBP12.88□□□□□ -0.35
VPS4B-202ENST00000588059 PDCD2LQ9BRP1 358 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 KMT2EQ8IZD2 1858 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 KIAA1671Q9BY89 1806 aa12.88□□□□□ -0.35
VPS4B-202ENST00000588059 C5orf67F2Z3F1 127 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 GRM6O15303 877 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 CAND2O75155 1236 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 TBX10O75333 385 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 SMIM10L2AP0DMW4 78 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 SMIM10L2BP0DMW5 78 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 MYCLP12524 364 aaPredicted RBP12.87□□□□□ -0.35
VPS4B-202ENST00000588059 RRP1P56182 461 aaKnown RBP12.87□□□□□ -0.35
VPS4B-202ENST00000588059 SP2Q02086 613 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 ASPRV1Q53RT3 343 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 KCNV1Q6PIU1 500 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 RNF135Q8IUD6 432 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 PRSS33Q8NF86 280 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 IL31RAQ8NI17 732 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 ESR2Q92731 530 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 GPKOWQ92917 476 aaPredicted RBP eCLIP12.87□□□□□ -0.35
VPS4B-202ENST00000588059 RNF41Q9H4P4 317 aaPredicted RBP12.87□□□□□ -0.35
VPS4B-202ENST00000588059 JMJD4Q9H9V9 463 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 PCDHB15Q9Y5E8 787 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 CCDC171Q6TFL3 1326 aa12.87□□□□□ -0.35
VPS4B-202ENST00000588059 H3BRB1 525 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 DHX16O60231 1041 aaKnown RBP12.86□□□□□ -0.35
VPS4B-202ENST00000588059 LGALS2P05162 132 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 GTF2F1P35269 517 aaKnown RBP eCLIP12.86□□□□□ -0.35
VPS4B-202ENST00000588059 NMIQ13287 307 aaPredicted RBP12.86□□□□□ -0.35
VPS4B-202ENST00000588059 SMAD4Q13485 552 aaKnown RBP12.86□□□□□ -0.35
VPS4B-202ENST00000588059 STOX1Q6ZVD7 989 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 FIBCD1Q8N539 461 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 APBB2Q92870 758 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 IL17RAQ96F46 866 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 C11orf84Q9BUA3 381 aaPredicted RBP12.86□□□□□ -0.35
VPS4B-202ENST00000588059 LMAN2LQ9H0V9 348 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 RNPEPQ9H4A4 650 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 TUT1Q9H6E5 874 aaKnown RBP12.86□□□□□ -0.35
VPS4B-202ENST00000588059 KAT14Q9H8E8 782 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 RC3H2Q9HBD1 1191 aaKnown RBP12.86□□□□□ -0.35
VPS4B-202ENST00000588059 TTC3P53804 2025 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 KAT6AQ92794 2004 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 ADGRA3Q8IWK6 1321 aa12.86□□□□□ -0.35
VPS4B-202ENST00000588059 LINC01565O15544 149 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 KDM4AO75164 1064 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 RB1P06400 928 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 BMPR1AP36894 532 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 PGM5Q15124 567 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 VSIG10LQ86VR7 867 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 ENAHQ8N8S7 591 aaPredicted RBP12.85□□□□□ -0.35
VPS4B-202ENST00000588059 EDAQ92838 391 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 AMNQ9BXJ7 453 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 BCAS3Q9H6U6 928 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 MLXIPQ9HAP2 919 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 VAT1LQ9HCJ6 419 aa12.85□□□□□ -0.35
VPS4B-202ENST00000588059 ZDBF2Q9HCK1 2354 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 STXBP3O00186 592 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 PPP1R11O60927 126 aaPredicted RBP12.84□□□□□ -0.35
VPS4B-202ENST00000588059 PARP1P09874 1014 aaKnown RBP12.84□□□□□ -0.35
VPS4B-202ENST00000588059 TGFB3P10600 412 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 HOXA13P31271 388 aaPredicted RBP12.84□□□□□ -0.35
VPS4B-202ENST00000588059 PDE1AP54750 535 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 CCDC178Q5BJE1 867 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 FAM26DQ5JW98 314 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 IER5LQ5T953 404 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 BMP8AQ7Z5Y6 402 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 IQCA1Q86XH1 822 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 CLP1Q92989 425 aaKnown RBP12.84□□□□□ -0.35
VPS4B-202ENST00000588059 ZFP91Q96JP5 570 aaPredicted RBP12.84□□□□□ -0.35
VPS4B-202ENST00000588059 SETD4Q9NVD3 440 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 MAP3K20Q9NYL2 800 aaKnown RBP12.84□□□□□ -0.35
VPS4B-202ENST00000588059 CD207Q9UJ71 328 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 RWDD3Q9Y3V2 267 aa12.84□□□□□ -0.35
VPS4B-202ENST00000588059 USP34Q70CQ2 3546 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 TMEM221A6NGB7 291 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 B4E1Z4 1266 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 M0R296 226 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 CSPG5O95196 566 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 MMP1P03956 469 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 CCND2P30279 289 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 NT5C2P49902 561 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 PTPN5P54829 565 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 ADAM17P78536 824 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 TICAM2Q86XR7 235 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 TRIM50Q86XT4 487 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 STAG2Q8N3U4 1231 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 LMBR1Q8WVP7 490 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 MTMR8Q96EF0 704 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 MSLNLQ96KJ4 702 aa12.83□□□□□ -0.36
VPS4B-202ENST00000588059 ZSCAN10Q96SZ4 725 aaPredicted RBP12.83□□□□□ -0.36
VPS4B-202ENST00000588059 BAZ2BQ9UIF8 2168 aaKnown RBP12.82□□□□□ -0.36
VPS4B-202ENST00000588059 TRIM6-TRIM34B2RNG4 842 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 NOP56O00567 594 aaKnown RBP12.82□□□□□ -0.36
VPS4B-202ENST00000588059 ZNF213O14771 459 aa12.82□□□□□ -0.36
VPS4B-202ENST00000588059 EYA4O95677 639 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms