RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 SAMD11Q96NU1 681 aa25.34■■□□□ 1.65
SHMT1-210ENST00000583780 TUT1Q9H6E5 874 aaKnown RBP25.34■■□□□ 1.65
SHMT1-210ENST00000583780 C17orf102A2RUQ5 167 aa25.33■■□□□ 1.65
SHMT1-210ENST00000583780 KLRF2D3W0D1 207 aa25.33■■□□□ 1.65
SHMT1-210ENST00000583780 ALADP13716 330 aa25.33■■□□□ 1.65
SHMT1-210ENST00000583780 SSTR3P32745 418 aaPredicted RBP25.33■■□□□ 1.65
SHMT1-210ENST00000583780 GPM6BQ13491 265 aa25.33■■□□□ 1.65
SHMT1-210ENST00000583780 PUS10Q3MIT2 529 aaKnown RBP25.33■■□□□ 1.65
SHMT1-210ENST00000583780 CWC27Q6UX04 472 aaKnown RBP25.33■■□□□ 1.65
SHMT1-210ENST00000583780 ALYREFQ86V81 257 aaKnown RBP25.33■■□□□ 1.65
SHMT1-210ENST00000583780 TMEM192Q8IY95 271 aa25.33■■□□□ 1.65
SHMT1-210ENST00000583780 MAD2L2Q9UI95 211 aa25.33■■□□□ 1.65
SHMT1-210ENST00000583780 PCDHA1Q9Y5I3 950 aa25.33■■□□□ 1.65
SHMT1-210ENST00000583780 ATG2AQ2TAZ0 1938 aa25.33■■□□□ 1.65
SHMT1-210ENST00000583780 KAT6AQ92794 2004 aa25.32■■□□□ 1.64
SHMT1-210ENST00000583780 ZBTB5O15062 677 aa25.32■■□□□ 1.64
SHMT1-210ENST00000583780 UPP2O95045 317 aa25.32■■□□□ 1.64
SHMT1-210ENST00000583780 SMIM10L2AP0DMW4 78 aa25.32■■□□□ 1.64
SHMT1-210ENST00000583780 SMIM10L2BP0DMW5 78 aa25.32■■□□□ 1.64
SHMT1-210ENST00000583780 SEC23AQ15436 765 aa25.32■■□□□ 1.64
SHMT1-210ENST00000583780 PTPROQ16827 1216 aa25.32■■□□□ 1.64
SHMT1-210ENST00000583780 TCEAL5Q5H9L2 206 aa25.32■■□□□ 1.64
SHMT1-210ENST00000583780 PABPC5Q96DU9 382 aaKnown RBP25.32■■□□□ 1.64
SHMT1-210ENST00000583780 MLXIPQ9HAP2 919 aa25.32■■□□□ 1.64
SHMT1-210ENST00000583780 PALM3A6NDB9 673 aaPredicted RBP25.31■■□□□ 1.64
SHMT1-210ENST00000583780 LGALS2P05162 132 aa25.31■■□□□ 1.64
SHMT1-210ENST00000583780 PLEKHM2Q8IWE5 1019 aa25.31■■□□□ 1.64
SHMT1-210ENST00000583780 SEPT8Q92599 483 aa25.31■■□□□ 1.64
SHMT1-210ENST00000583780 RALGAPA2Q2PPJ7 1873 aa25.3■■□□□ 1.64
SHMT1-210ENST00000583780 C19orf67A6NJJ6 358 aa25.3■■□□□ 1.64
SHMT1-210ENST00000583780 LTBRP36941 435 aa25.3■■□□□ 1.64
SHMT1-210ENST00000583780 YME1L1Q96TA2 773 aa25.3■■□□□ 1.64
SHMT1-210ENST00000583780 DSCC1Q9BVC3 393 aa25.3■■□□□ 1.64
SHMT1-210ENST00000583780 KRT23Q9C075 422 aa25.3■■□□□ 1.64
SHMT1-210ENST00000583780 OSBPL3Q9H4L5 887 aa25.3■■□□□ 1.64
SHMT1-210ENST00000583780 C5orf42Q9H799 3197 aa25.29■■□□□ 1.64
SHMT1-210ENST00000583780 LINC00271P0C7V0 271 aa25.29■■□□□ 1.64
SHMT1-210ENST00000583780 ADAM17P78536 824 aa25.29■■□□□ 1.64
SHMT1-210ENST00000583780 MRPS9P82933 396 aaKnown RBP25.29■■□□□ 1.64
SHMT1-210ENST00000583780 TIGD5Q53EQ6 642 aa25.29■■□□□ 1.64
SHMT1-210ENST00000583780 IFIT1BQ5T764 474 aaKnown RBP25.29■■□□□ 1.64
SHMT1-210ENST00000583780 RIOX1Q9H6W3 641 aa25.29■■□□□ 1.64
SHMT1-210ENST00000583780 SETD4Q9NVD3 440 aa25.29■■□□□ 1.64
SHMT1-210ENST00000583780 TELO2Q9Y4R8 837 aa25.29■■□□□ 1.64
SHMT1-210ENST00000583780 COL4A6Q14031 1691 aa25.29■■□□□ 1.64
SHMT1-210ENST00000583780 CAND2O75155 1236 aa25.28■■□□□ 1.64
SHMT1-210ENST00000583780 CTSHP09668 335 aa25.28■■□□□ 1.64
SHMT1-210ENST00000583780 CCND2P30279 289 aa25.28■■□□□ 1.64
SHMT1-210ENST00000583780 ICAM3P32942 547 aa25.28■■□□□ 1.64
SHMT1-210ENST00000583780 ZP2Q05996 745 aa25.28■■□□□ 1.64
SHMT1-210ENST00000583780 IMMTQ16891 758 aaKnown RBP25.28■■□□□ 1.64
SHMT1-210ENST00000583780 FAM26DQ5JW98 314 aa25.28■■□□□ 1.64
SHMT1-210ENST00000583780 CYB5R4Q7L1T6 521 aa25.28■■□□□ 1.64
SHMT1-210ENST00000583780 FCHSD1Q86WN1 690 aa25.28■■□□□ 1.64
SHMT1-210ENST00000583780 SMC5Q8IY18 1101 aa25.28■■□□□ 1.64
SHMT1-210ENST00000583780 USP26Q9BXU7 913 aa25.28■■□□□ 1.64
SHMT1-210ENST00000583780 NSUN3Q9H649 340 aaKnown RBP25.28■■□□□ 1.64
SHMT1-210ENST00000583780 GCOM1H8Y6P7 765 aaPredicted RBP25.27■■□□□ 1.64
SHMT1-210ENST00000583780 DCXO43602 365 aa25.27■■□□□ 1.64
SHMT1-210ENST00000583780 POLR2MP0CAP2 368 aa25.27■■□□□ 1.64
SHMT1-210ENST00000583780 SEMA3FQ13275 785 aa25.27■■□□□ 1.64
SHMT1-210ENST00000583780 PIGSQ96S52 555 aa25.27■■□□□ 1.64
SHMT1-210ENST00000583780 UBAC1Q9BSL1 405 aa25.27■■□□□ 1.64
SHMT1-210ENST00000583780 SUPT16HQ9Y5B9 1047 aaKnown RBP25.27■■□□□ 1.64
SHMT1-210ENST00000583780 SPATA31C2B4DYI2 1134 aa25.26■■□□□ 1.63
SHMT1-210ENST00000583780 CYTH3O43739 400 aa25.26■■□□□ 1.63
SHMT1-210ENST00000583780 CTC1Q2NKJ3 1217 aa25.26■■□□□ 1.63
SHMT1-210ENST00000583780 B4GALNT3Q6L9W6 998 aa25.26■■□□□ 1.63
SHMT1-210ENST00000583780 UIMC1Q96RL1 719 aa25.26■■□□□ 1.63
SHMT1-210ENST00000583780 GPR20Q99678 358 aa25.26■■□□□ 1.63
SHMT1-210ENST00000583780 PRKAG3Q9UGI9 489 aa25.26■■□□□ 1.63
SHMT1-210ENST00000583780 ZNF318Q5VUA4 2279 aa25.26■■□□□ 1.63
SHMT1-210ENST00000583780 TRIOO75962 3097 aa25.26■■□□□ 1.63
SHMT1-210ENST00000583780 WDFY4Q6ZS81 3184 aa25.25■■□□□ 1.63
SHMT1-210ENST00000583780 C5orf67F2Z3F1 127 aa25.25■■□□□ 1.63
SHMT1-210ENST00000583780 CYFIP1Q7L576 1253 aa25.25■■□□□ 1.63
SHMT1-210ENST00000583780 INPP4AQ96PE3 977 aaPredicted RBP25.25■■□□□ 1.63
SHMT1-210ENST00000583780 IFIH1Q9BYX4 1025 aaKnown RBP25.25■■□□□ 1.63
SHMT1-210ENST00000583780 IL25Q9H293 177 aa25.25■■□□□ 1.63
SHMT1-210ENST00000583780 CNNM2Q9H8M5 875 aa25.25■■□□□ 1.63
SHMT1-210ENST00000583780 TTC3P53804 2025 aa25.25■■□□□ 1.63
SHMT1-210ENST00000583780 CHRNA1P02708 482 aa25.24■■□□□ 1.63
SHMT1-210ENST00000583780 DLX2Q07687 328 aaPredicted RBP25.24■■□□□ 1.63
SHMT1-210ENST00000583780 METTL7BQ6UX53 244 aa25.24■■□□□ 1.63
SHMT1-210ENST00000583780 EP400NLQ6ZTU2 488 aa25.24■■□□□ 1.63
SHMT1-210ENST00000583780 HOMER1Q86YM7 354 aa25.24■■□□□ 1.63
SHMT1-210ENST00000583780 APBB2Q92870 758 aa25.24■■□□□ 1.63
SHMT1-210ENST00000583780 IL17RAQ96F46 866 aa25.24■■□□□ 1.63
SHMT1-210ENST00000583780 DIAPH3Q9NSV4 1193 aa25.24■■□□□ 1.63
SHMT1-210ENST00000583780 CLDND1Q9NY35 253 aa25.24■■□□□ 1.63
SHMT1-210ENST00000583780 RTEL1Q9NZ71 1219 aa25.24■■□□□ 1.63
SHMT1-210ENST00000583780 FRMPD4Q14CM0 1322 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 GNAT1P11488 350 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 BMPR1AP36894 532 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 NEDD9Q14511 834 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 GRM4Q14833 912 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 CSPP1Q1MSJ5 1256 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 CHD1LQ86WJ1 897 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 TRIM50Q86XT4 487 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 ADHFE1Q8IWW8 467 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms