RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 SMARCC2Q8TAQ2 1214 aa20.88■□□□□ 0.93
CHD3-214ENST00000572579 CERS4Q9HA82 394 aa20.88■□□□□ 0.93
CHD3-214ENST00000572579 FAM217BQ9NTX9 383 aaPredicted RBP20.88■□□□□ 0.93
CHD3-214ENST00000572579 SLC12A7Q9Y666 1083 aa20.88■□□□□ 0.93
CHD3-214ENST00000572579 H3BRB1 525 aa20.87■□□□□ 0.93
CHD3-214ENST00000572579 ACTN1P12814 892 aa20.87■□□□□ 0.93
CHD3-214ENST00000572579 WDR5P61964 334 aaKnown RBP20.87■□□□□ 0.93
CHD3-214ENST00000572579 DEFB103AP81534 67 aa20.87■□□□□ 0.93
CHD3-214ENST00000572579 CCDC85BQ15834 202 aaPredicted RBP20.87■□□□□ 0.93
CHD3-214ENST00000572579 TSGA10IPQ3SY00 556 aa20.87■□□□□ 0.93
CHD3-214ENST00000572579 SERINC5Q86VE9 423 aa20.87■□□□□ 0.93
CHD3-214ENST00000572579 TRIM50Q86XT4 487 aa20.87■□□□□ 0.93
CHD3-214ENST00000572579 GAS2L1Q99501 681 aaPredicted RBP20.87■□□□□ 0.93
CHD3-214ENST00000572579 RNPEPQ9H4A4 650 aa20.87■□□□□ 0.93
CHD3-214ENST00000572579 TUT1Q9H6E5 874 aaKnown RBP20.87■□□□□ 0.93
CHD3-214ENST00000572579 PSTPIP2Q9H939 334 aa20.87■□□□□ 0.93
CHD3-214ENST00000572579 LCHNA4D1U4 455 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 TREHO43280 583 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 FIBPO43427 364 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 STAM2O75886 525 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 SMIM10L2AP0DMW4 78 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 SMIM10L2BP0DMW5 78 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 IGFBP4P22692 258 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 TAP1Q03518 808 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 MKRN4PQ13434 485 aaPredicted RBP20.86■□□□□ 0.93
CHD3-214ENST00000572579 MICU3Q86XE3 530 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 NEK1Q96PY6 1258 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 SLC9A7Q96T83 725 aa20.86■□□□□ 0.93
CHD3-214ENST00000572579 SEC63Q9UGP8 760 aaKnown RBP20.86■□□□□ 0.93
CHD3-214ENST00000572579 TRIP12Q14669 1992 aaPredicted RBP20.86■□□□□ 0.93
CHD3-214ENST00000572579 BAIAP3O94812 1187 aa20.85■□□□□ 0.93
CHD3-214ENST00000572579 CALM1P0DP23 149 aa20.85■□□□□ 0.93
CHD3-214ENST00000572579 CALM2P0DP24 149 aa20.85■□□□□ 0.93
CHD3-214ENST00000572579 CALM3P0DP25 149 aa20.85■□□□□ 0.93
CHD3-214ENST00000572579 NEDD9Q14511 834 aa20.85■□□□□ 0.93
CHD3-214ENST00000572579 GNPTABQ3T906 1256 aa20.85■□□□□ 0.93
CHD3-214ENST00000572579 APOA5Q6Q788 366 aa20.85■□□□□ 0.93
CHD3-214ENST00000572579 CCDC155Q8N6L0 562 aa20.85■□□□□ 0.93
CHD3-214ENST00000572579 SENP7Q9BQF6 1050 aa20.85■□□□□ 0.93
CHD3-214ENST00000572579 TRANK1O15050 2925 aa20.84■□□□□ 0.93
CHD3-214ENST00000572579 KCNA2P16389 499 aa20.84■□□□□ 0.93
CHD3-214ENST00000572579 ADAM17P78536 824 aa20.84■□□□□ 0.93
CHD3-214ENST00000572579 KRT40Q6A162 431 aa20.84■□□□□ 0.93
CHD3-214ENST00000572579 WWC2Q6AWC2 1192 aa20.84■□□□□ 0.93
CHD3-214ENST00000572579 XRRA1Q6P2D8 792 aa20.84■□□□□ 0.93
CHD3-214ENST00000572579 CNKSR3Q6P9H4 555 aa20.84■□□□□ 0.93
CHD3-214ENST00000572579 DHX32Q7L7V1 743 aaKnown RBP20.84■□□□□ 0.93
CHD3-214ENST00000572579 CUL5Q93034 780 aa20.84■□□□□ 0.93
CHD3-214ENST00000572579 SETD4Q9NVD3 440 aa20.84■□□□□ 0.93
CHD3-214ENST00000572579 UBIAD1Q9Y5Z9 338 aa20.84■□□□□ 0.93
CHD3-214ENST00000572579 CNTNAP5Q8WYK1 1306 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 MYH7BA7E2Y1 1941 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 C17orf102A2RUQ5 167 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 CPA1P15085 419 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 THPOP40225 353 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 SP4Q02446 784 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.83■□□□□ 0.931e-11■■■■■ 46.3
CHD3-214ENST00000572579 KCNB2Q92953 911 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 ATP6V0A1Q93050 837 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 USP26Q9BXU7 913 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 PCDHA6Q9UN73 950 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 PCDHA8Q9Y5H6 950 aa20.83■□□□□ 0.93
CHD3-214ENST00000572579 GBF1Q92538 1859 aa20.83■□□□□ 0.92
CHD3-214ENST00000572579 GSTTP1A0A1W2PQM5 241 aa20.82■□□□□ 0.92
CHD3-214ENST00000572579 LPXNO60711 386 aa20.82■□□□□ 0.92
CHD3-214ENST00000572579 CDC27P30260 824 aa20.82■□□□□ 0.92
CHD3-214ENST00000572579 UTP14CQ5TAP6 766 aaKnown RBP20.82■□□□□ 0.92
CHD3-214ENST00000572579 HEATR3Q7Z4Q2 680 aa20.82■□□□□ 0.92
CHD3-214ENST00000572579 CYP2W1Q8TAV3 490 aa20.82■□□□□ 0.92
CHD3-214ENST00000572579 ABHD14A-ACY1A0A1B0GW23 586 aa20.81■□□□□ 0.92
CHD3-214ENST00000572579 RSPH10B2B2RC85 870 aa20.81■□□□□ 0.92
CHD3-214ENST00000572579 NOP56O00567 594 aaKnown RBP20.81■□□□□ 0.92
CHD3-214ENST00000572579 ADAMTS3O15072 1205 aa20.81■□□□□ 0.92
CHD3-214ENST00000572579 CDC45O75419 566 aa20.81■□□□□ 0.92
CHD3-214ENST00000572579 PARNO95453 639 aaKnown RBP20.81■□□□□ 0.92
CHD3-214ENST00000572579 RSPH10BP0C881 870 aa20.81■□□□□ 0.92
CHD3-214ENST00000572579 DBF4BQ8NFT6 615 aa20.81■□□□□ 0.92
CHD3-214ENST00000572579 GPRASP2Q96D09 838 aa20.81■□□□□ 0.92
CHD3-214ENST00000572579 MTCH2Q9Y6C9 303 aa20.81■□□□□ 0.92
CHD3-214ENST00000572579 V9GY48 417 aaPredicted RBP20.81■□□□□ 0.92
CHD3-214ENST00000572579 TANC1Q9C0D5 1861 aa20.81■□□□□ 0.92
CHD3-214ENST00000572579 LGR5O75473 907 aa20.8■□□□□ 0.92
CHD3-214ENST00000572579 POU3F3P20264 500 aaPredicted RBP20.8■□□□□ 0.92
CHD3-214ENST00000572579 RNF20Q5VTR2 975 aa20.8■□□□□ 0.92
CHD3-214ENST00000572579 NLRX1Q86UT6 975 aa20.8■□□□□ 0.92
CHD3-214ENST00000572579 ARNTL2Q8WYA1 636 aa20.8■□□□□ 0.92
CHD3-214ENST00000572579 PGBD1Q96JS3 809 aa20.8■□□□□ 0.92
CHD3-214ENST00000572579 PCYT2Q99447 389 aa20.8■□□□□ 0.92
CHD3-214ENST00000572579 JADE2Q9NQC1 790 aa20.8■□□□□ 0.92
CHD3-214ENST00000572579 PKD2L1Q9P0L9 805 aa20.8■□□□□ 0.92
CHD3-214ENST00000572579 STXBP3O00186 592 aa20.79■□□□□ 0.92
CHD3-214ENST00000572579 TLL1O43897 1013 aa20.79■□□□□ 0.92
CHD3-214ENST00000572579 GJB5O95377 273 aa20.79■□□□□ 0.92
CHD3-214ENST00000572579 KCNJ6P48051 423 aa20.79■□□□□ 0.92
CHD3-214ENST00000572579 PLEKHG4Q58EX7 1191 aa20.79■□□□□ 0.92
CHD3-214ENST00000572579 LMBR1Q8WVP7 490 aa20.79■□□□□ 0.92
CHD3-214ENST00000572579 PRRC2BQ5JSZ5 2229 aaKnown RBP20.78■□□□□ 0.92
CHD3-214ENST00000572579 KIF28PB7ZC32 967 aa20.78■□□□□ 0.92
CHD3-214ENST00000572579 ZBTB43O43298 467 aa20.78■□□□□ 0.92
CHD3-214ENST00000572579 ADD1P35611 737 aaKnown RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms