RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 POLR2MP0CAP2 368 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 CASTP20810 708 aaKnown RBP9.32□□□□□ -0.92
TRAF3-205ENST00000558700 CCND2P30279 289 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 KIF5BP33176 963 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 PBX2P40425 430 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 ANTXR2P58335 489 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 TROAPQ12815 778 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 LAMC2Q13753 1193 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 PGM5Q15124 567 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 LY6KQ17RY6 165 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 ARSIQ5FYB1 569 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 STOX1Q6ZVD7 989 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 CHST3Q7LGC8 479 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 SESTD1Q86VW0 696 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 RDH13Q8NBN7 331 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 PPTC7Q8NI37 304 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 CTCFLQ8NI51 663 aaPredicted RBP9.32□□□□□ -0.92
TRAF3-205ENST00000558700 MAP4K1Q92918 833 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 PIGSQ96S52 555 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 SPZ1Q9BXG8 430 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 ZSWIM6Q9HCJ5 1215 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 CXXC1Q9P0U4 656 aaPredicted RBP9.32□□□□□ -0.92
TRAF3-205ENST00000558700 SEC63Q9UGP8 760 aaKnown RBP9.32□□□□□ -0.92
TRAF3-205ENST00000558700 TAF6LQ9Y6J9 622 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 SLC4A7Q9Y6M7 1214 aa9.32□□□□□ -0.92
TRAF3-205ENST00000558700 BAZ2BQ9UIF8 2168 aaKnown RBP9.31□□□□□ -0.92
TRAF3-205ENST00000558700 CUL9Q8IWT3 2517 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 LILRB3O75022 631 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 MYCLP12524 364 aaPredicted RBP9.31□□□□□ -0.92
TRAF3-205ENST00000558700 ATP2A2P16615 1042 aaKnown RBP9.31□□□□□ -0.92
TRAF3-205ENST00000558700 HOXA13P31271 388 aaPredicted RBP9.31□□□□□ -0.92
TRAF3-205ENST00000558700 CHMP4BP1P59074 171 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 GRIN2CQ14957 1233 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 PTGISQ16647 500 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 SLC35G1Q2M3R5 365 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 GNPTABQ3T906 1256 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 NUDT18Q6ZVK8 323 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 DEFB128Q7Z7B8 93 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 PACS2Q86VP3 889 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 DHX37Q8IY37 1157 aaKnown RBP9.31□□□□□ -0.92
TRAF3-205ENST00000558700 ZNF654Q8IZM8 581 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 ZNF710Q8N1W2 664 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 AFAP1L1Q8TED9 768 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 GLMNQ92990 594 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 RRP36Q96EU6 259 aaKnown RBP9.31□□□□□ -0.92
TRAF3-205ENST00000558700 TMEM87BQ96K49 555 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 SLC9A7Q96T83 725 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 MAP3K14Q99558 947 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 NKX2-4Q9H2Z4 354 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 SLC28A3Q9HAS3 691 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 SENP2Q9HC62 589 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 DDX41Q9UJV9 622 aaKnown RBP9.31□□□□□ -0.92
TRAF3-205ENST00000558700 COL4A4P53420 1690 aaPredicted RBP9.31□□□□□ -0.92
TRAF3-205ENST00000558700 FRMPD4Q14CM0 1322 aa9.31□□□□□ -0.92
TRAF3-205ENST00000558700 CCDC69A6NI79 296 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 PPP1R3GB7ZBB8 358 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 PRC1O43663 620 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 CYTH3O43739 400 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 STAM2O75886 525 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 BAIAP3O94812 1187 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 PARNO95453 639 aaKnown RBP9.3□□□□□ -0.92
TRAF3-205ENST00000558700 GGPS1O95749 300 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 ZNF286BP0CG31 522 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 TGFB3P10600 412 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 HOXD8P13378 290 aaPredicted RBP9.3□□□□□ -0.92
TRAF3-205ENST00000558700 UBA1P22314 1058 aaKnown RBP9.3□□□□□ -0.92
TRAF3-205ENST00000558700 PSEN2P49810 448 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 GNAQP50148 359 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 RBL2Q08999 1139 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 QPCTQ16769 361 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 BMP2KLQ5H9B9 411 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 GDF6Q6KF10 455 aaPredicted RBP9.3□□□□□ -0.92
TRAF3-205ENST00000558700 NFXL1Q6ZNB6 911 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 LRRC8DQ7L1W4 858 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 TMTC2Q8N394 836 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 C7orf31Q8N865 590 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 IL31RAQ8NI17 732 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 IGDCC4Q8TDY8 1250 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 CUL5Q93034 780 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 SPATA33Q96N06 139 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 LZTS2Q9BRK4 669 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 ESYT1Q9BSJ8 1104 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 FTOQ9C0B1 505 aaKnown RBP eCLIP9.3□□□□□ -0.92
TRAF3-205ENST00000558700 LSG1Q9H089 658 aaKnown RBP9.3□□□□□ -0.92
TRAF3-205ENST00000558700 PRDM12Q9H4Q4 367 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 LY9Q9HBG7 655 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 PCDHA11Q9Y5I1 949 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 PTPRSQ13332 1948 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 TRIP12Q14669 1992 aaPredicted RBP9.3□□□□□ -0.92
TRAF3-205ENST00000558700 DOCK5Q9H7D0 1870 aa9.3□□□□□ -0.92
TRAF3-205ENST00000558700 SH2B2O14492 632 aaPredicted RBP9.29□□□□□ -0.92
TRAF3-205ENST00000558700 SLC27A2O14975 620 aa9.29□□□□□ -0.92
TRAF3-205ENST00000558700 RGS20O76081 388 aa9.29□□□□□ -0.92
TRAF3-205ENST00000558700 IQCF3P0C7M6 154 aa9.29□□□□□ -0.92
TRAF3-205ENST00000558700 CALM1P0DP23 149 aa9.29□□□□□ -0.92
TRAF3-205ENST00000558700 CALM2P0DP24 149 aa9.29□□□□□ -0.92
TRAF3-205ENST00000558700 CALM3P0DP25 149 aa9.29□□□□□ -0.92
TRAF3-205ENST00000558700 SELPP16109 830 aa9.29□□□□□ -0.92
TRAF3-205ENST00000558700 NDUFV2P19404 249 aa9.29□□□□□ -0.92
TRAF3-205ENST00000558700 SMARCA1P28370 1054 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms