RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 PRPHP41219 470 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 TECP42680 631 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 ME1P48163 572 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 SP2Q02086 613 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 CACNB2Q08289 660 aaPredicted RBP10.86□□□□□ -0.67
CUX1-216ENST00000558469 TRIM32Q13049 653 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 TTLL4Q14679 1199 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 LY6KQ17RY6 165 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 CCDC144BQ3MJ40 725 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 LRCH2Q5VUJ6 765 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 KCNV1Q6PIU1 500 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 DTHD1Q6ZMT9 781 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 CLEC17AQ6ZS10 378 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 SLAIN1Q8ND83 568 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 PXYLP1Q8TE99 480 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 SCFD2Q8WU76 684 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 SLC5A5Q92911 643 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 FAM20AQ96MK3 541 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 GBP4Q96PP9 640 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 TTC12Q9H892 705 aaPredicted RBP10.86□□□□□ -0.67
CUX1-216ENST00000558469 PCDHA12Q9UN75 941 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 PTCH2Q9Y6C5 1203 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 RBM47A0AV96 593 aaKnown RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 VWA3AA6NCI4 1184 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 DDX39AO00148 427 aaKnown RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 DHX15O43143 795 aaKnown RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 MAP3K13O43283 966 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 SORBS3O60504 671 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 GAS7O60861 476 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 PPP6R2O75170 966 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 ARIH2O95376 493 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 HMGCRP04035 888 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 ZNF865P0CJ78 1059 aaPredicted RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 TXNP10599 105 aaKnown RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 KCNA2P16389 499 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 GRK4P32298 578 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 ADCYAP1R1P41586 468 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 ITGB3BPQ13352 177 aaPredicted RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 IL17AQ16552 155 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 TMEM266Q2M3C6 531 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 TPRNQ4KMQ1 711 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 TMEM63BQ5T3F8 832 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 ARL6IP4Q66PJ3 421 aaKnown RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 IQSEC1Q6DN90 963 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 CYFIP1Q7L576 1253 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 CTU1Q7Z7A3 348 aaKnown RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 KRI1Q8N9T8 703 aaKnown RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 TRPV1Q8NER1 839 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 KCNG4Q8TDN1 519 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 FERMT2Q96AC1 680 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 CLIC6Q96NY7 704 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 SDF4Q9BRK5 362 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 BCAS3Q9H6U6 928 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 TBC1D22BQ9NU19 505 aa10.85□□□□□ -0.67
CUX1-216ENST00000558469 DDX41Q9UJV9 622 aaKnown RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 FBXO2Q9UK22 296 aaPredicted RBP10.85□□□□□ -0.67
CUX1-216ENST00000558469 CENPFP49454 3210 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.84□□□□□ -0.67
CUX1-216ENST00000558469 PSMD10O75832 226 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 CYBAP13498 195 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 SMPD1P17405 629 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 UBA1P22314 1058 aaKnown RBP10.84□□□□□ -0.67
CUX1-216ENST00000558469 CNGA1P29973 690 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 TNFAIP2Q03169 654 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 NEDD9Q14511 834 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 CSPP1Q1MSJ5 1256 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 GJC2Q5T442 439 aaPredicted RBP10.84□□□□□ -0.67
CUX1-216ENST00000558469 CCDC62Q6P9F0 684 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 GIMAP8Q8ND71 665 aaPredicted RBP10.84□□□□□ -0.67
CUX1-216ENST00000558469 COPS5Q92905 334 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 RIT2Q99578 217 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 SENP7Q9BQF6 1050 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 TEKT3Q9BXF9 490 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 NRBP1Q9UHY1 535 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 FAM184BQ9ULE4 1060 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 PCDHA7Q9UN72 937 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 SRPRBQ9Y5M8 271 aaKnown RBP10.84□□□□□ -0.67
CUX1-216ENST00000558469 MORC2Q9Y6X9 1032 aaPredicted RBP10.84□□□□□ -0.67
CUX1-216ENST00000558469 NFASCO94856 1347 aa10.84□□□□□ -0.67
CUX1-216ENST00000558469 POTEMA6NI47 508 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 ADCY6O43306 1168 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 CHMP2AO43633 222 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 CUTAO60888 179 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 GGPS1O95749 300 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 INHAP05111 366 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 PTGS1P23219 599 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 CCND3P30281 292 aaPredicted RBP10.83□□□□□ -0.68
CUX1-216ENST00000558469 LONP1P36776 959 aaKnown RBP10.83□□□□□ -0.68
CUX1-216ENST00000558469 SP4Q02446 784 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 GRIN1Q05586 938 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 PDIA5Q14554 519 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 SLC9C1Q4G0N8 1177 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 DUSP28Q4G0W2 176 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 SPECC1Q5M775 1068 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 CELF3Q5SZQ8 465 aaKnown RBP10.83□□□□□ -0.68
CUX1-216ENST00000558469 NCAPH2Q6IBW4 605 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 DHX37Q8IY37 1157 aaKnown RBP10.83□□□□□ -0.68
CUX1-216ENST00000558469 SH3TC2Q8TF17 1288 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 RAB34Q9BZG1 259 aa10.83□□□□□ -0.68
CUX1-216ENST00000558469 CSRNP2Q9H175 543 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms