RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TREHO43280 583 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 SMIM10L2AP0DMW4 78 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 SMIM10L2BP0DMW5 78 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 TGFB3P10600 412 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 COL19A1Q14993 1142 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 SLC35G1Q2M3R5 365 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 SAMD11Q96NU1 681 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 RNPEPQ9H4A4 650 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 TUT1Q9H6E5 874 aaKnown RBP20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 CTNNA3Q9UI47 895 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 MAD2L2Q9UI95 211 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 PCDHA1Q9Y5I3 950 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 KLRF2D3W0D1 207 aa20.7■□□□□ 0.9
CLSTN3-214ENST00000542663 ZBTB5O15062 677 aa20.7■□□□□ 0.9
CLSTN3-214ENST00000542663 LGALS2P05162 132 aa20.7■□□□□ 0.9
CLSTN3-214ENST00000542663 SEC23AQ15436 765 aa20.7■□□□□ 0.9
CLSTN3-214ENST00000542663 PTPROQ16827 1216 aa20.7■□□□□ 0.9
CLSTN3-214ENST00000542663 TIGD5Q53EQ6 642 aa20.7■□□□□ 0.9
CLSTN3-214ENST00000542663 TMEM192Q8IY95 271 aa20.7■□□□□ 0.9
CLSTN3-214ENST00000542663 BANK1Q8NDB2 785 aa20.7■□□□□ 0.9
CLSTN3-214ENST00000542663 ZNF318Q5VUA4 2279 aa20.7■□□□□ 0.9
CLSTN3-214ENST00000542663 UPP2O95045 317 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 CTSHP09668 335 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 GPM6BQ13491 265 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 PUS10Q3MIT2 529 aaKnown RBP20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 TCEAL5Q5H9L2 206 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 SAMD3Q8N6K7 520 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 SEPT8Q92599 483 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 PABPC5Q96DU9 382 aaKnown RBP20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 YME1L1Q96TA2 773 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 DSCC1Q9BVC3 393 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 KRT23Q9C075 422 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 MLXIPQ9HAP2 919 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 PIEZO1Q92508 2521 aa20.69■□□□□ 0.9
CLSTN3-214ENST00000542663 TTC3P53804 2025 aa20.68■□□□□ 0.9
CLSTN3-214ENST00000542663 PALM3A6NDB9 673 aaPredicted RBP20.68■□□□□ 0.9
CLSTN3-214ENST00000542663 ALADP13716 330 aa20.68■□□□□ 0.9
CLSTN3-214ENST00000542663 CCND2P30279 289 aa20.68■□□□□ 0.9
CLSTN3-214ENST00000542663 IMMTQ16891 758 aaKnown RBP20.68■□□□□ 0.9
CLSTN3-214ENST00000542663 IFIT1BQ5T764 474 aaKnown RBP20.68■□□□□ 0.9
CLSTN3-214ENST00000542663 PLEKHM2Q8IWE5 1019 aa20.68■□□□□ 0.9
CLSTN3-214ENST00000542663 UBAC1Q9BSL1 405 aa20.68■□□□□ 0.9
CLSTN3-214ENST00000542663 OSBPL3Q9H4L5 887 aa20.68■□□□□ 0.9
CLSTN3-214ENST00000542663 POTEB3A0JP26 581 aa20.67■□□□□ 0.9
CLSTN3-214ENST00000542663 CAND2O75155 1236 aa20.67■□□□□ 0.9
CLSTN3-214ENST00000542663 MRPS9P82933 396 aaKnown RBP20.67■□□□□ 0.9
CLSTN3-214ENST00000542663 ZP2Q05996 745 aa20.67■□□□□ 0.9
CLSTN3-214ENST00000542663 POTEBQ6S5H4 581 aa20.67■□□□□ 0.9
CLSTN3-214ENST00000542663 CYB5R4Q7L1T6 521 aa20.67■□□□□ 0.9
CLSTN3-214ENST00000542663 ALYREFQ86V81 257 aaKnown RBP20.67■□□□□ 0.9
CLSTN3-214ENST00000542663 NSUN3Q9H649 340 aaKnown RBP20.67■□□□□ 0.9
CLSTN3-214ENST00000542663 TELO2Q9Y4R8 837 aa20.67■□□□□ 0.9
CLSTN3-214ENST00000542663 LINC00271P0C7V0 271 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 LTBRP36941 435 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 ADAM17P78536 824 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 SEMA3FQ13275 785 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 B4GALNT3Q6L9W6 998 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 FCHSD1Q86WN1 690 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 HOMER1Q86YM7 354 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 SMC5Q8IY18 1101 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 PIGSQ96S52 555 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 IL25Q9H293 177 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 RIOX1Q9H6W3 641 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 CNNM2Q9H8M5 875 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 DIAPH3Q9NSV4 1193 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 SETD4Q9NVD3 440 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 FRMPD4Q14CM0 1322 aa20.66■□□□□ 0.9
CLSTN3-214ENST00000542663 PLXNA4Q9HCM2 1894 aa20.65■□□□□ 0.9
CLSTN3-214ENST00000542663 C19orf67A6NJJ6 358 aa20.65■□□□□ 0.9
CLSTN3-214ENST00000542663 GCOM1H8Y6P7 765 aaPredicted RBP20.65■□□□□ 0.9
CLSTN3-214ENST00000542663 DCXO43602 365 aa20.65■□□□□ 0.9
CLSTN3-214ENST00000542663 POLR2MP0CAP2 368 aa20.65■□□□□ 0.9
CLSTN3-214ENST00000542663 TRIM50Q86XT4 487 aa20.65■□□□□ 0.9
CLSTN3-214ENST00000542663 INPP4AQ96PE3 977 aaPredicted RBP20.65■□□□□ 0.9
CLSTN3-214ENST00000542663 GPR20Q99678 358 aa20.65■□□□□ 0.9
CLSTN3-214ENST00000542663 USP26Q9BXU7 913 aa20.65■□□□□ 0.9
CLSTN3-214ENST00000542663 IFIH1Q9BYX4 1025 aaKnown RBP20.65■□□□□ 0.9
CLSTN3-214ENST00000542663 CYTH3O43739 400 aa20.64■□□□□ 0.89
CLSTN3-214ENST00000542663 ICAM3P32942 547 aa20.64■□□□□ 0.89
CLSTN3-214ENST00000542663 FAM26DQ5JW98 314 aa20.64■□□□□ 0.89
CLSTN3-214ENST00000542663 CYFIP1Q7L576 1253 aa20.64■□□□□ 0.89
CLSTN3-214ENST00000542663 APBB2Q92870 758 aa20.64■□□□□ 0.89
CLSTN3-214ENST00000542663 UIMC1Q96RL1 719 aa20.64■□□□□ 0.89
CLSTN3-214ENST00000542663 CLDND1Q9NY35 253 aa20.64■□□□□ 0.89
CLSTN3-214ENST00000542663 PRKAG3Q9UGI9 489 aa20.64■□□□□ 0.89
CLSTN3-214ENST00000542663 SUPT16HQ9Y5B9 1047 aaKnown RBP20.64■□□□□ 0.89
CLSTN3-214ENST00000542663 SPATA31C2B4DYI2 1134 aa20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 C5orf67F2Z3F1 127 aa20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 NOP56O00567 594 aaKnown RBP20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 GRM4Q14833 912 aa20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 CTC1Q2NKJ3 1217 aa20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 METTL7BQ6UX53 244 aa20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 EP400NLQ6ZTU2 488 aa20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 CHD1LQ86WJ1 897 aa20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 LMBR1Q8WVP7 490 aa20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 RC3H2Q9HBD1 1191 aaKnown RBP20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 SENP2Q9HC62 589 aa20.63■□□□□ 0.89
CLSTN3-214ENST00000542663 CHRNA1P02708 482 aa20.62■□□□□ 0.89
CLSTN3-214ENST00000542663 CSPP1Q1MSJ5 1256 aa20.62■□□□□ 0.89
CLSTN3-214ENST00000542663 GNPTABQ3T906 1256 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms