RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 HOXC8P31273 242 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 RFC2P35250 354 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 NEDD9Q14511 834 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 MBTPS1Q14703 1052 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 TRIM50Q86XT4 487 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 PIAS4Q8N2W9 510 aaPredicted RBP11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 CAGE1Q8TC20 777 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 BRF1Q92994 677 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 PGBD1Q96JS3 809 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 KATNAL1Q9BW62 490 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 TMEM260Q9NX78 707 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 SLC4A7Q9Y6M7 1214 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 GBF1Q92538 1859 aa11.99□□□□□ -0.49
PRPF40B-204ENST00000527253 CUL9Q8IWT3 2517 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 TANC1Q9C0D5 1861 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 GSTTP1A0A1W2PQM5 241 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 H3BRB1 525 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 SMIM10L2AP0DMW4 78 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 SMIM10L2BP0DMW5 78 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 PTK7Q13308 1070 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 ZNF618Q5T7W0 954 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 UTP14CQ5TAP6 766 aaKnown RBP11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 BLOC1S2Q6QNY1 142 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 LRRC8DQ7L1W4 858 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 NLRX1Q86UT6 975 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 SERINC5Q86VE9 423 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 MAFAQ8NHW3 353 aaPredicted RBP11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 CYP2W1Q8TAV3 490 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 AFAP1L1Q8TED9 768 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 GPRASP2Q96D09 838 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 SENP7Q9BQF6 1050 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 AGXT2Q9BYV1 514 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 FTOQ9C0B1 505 aaKnown RBP eCLIP11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 MTIF3Q9H2K0 278 aaKnown RBP11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 RNPEPQ9H4A4 650 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 TUT1Q9H6E5 874 aaKnown RBP11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 RIC8AQ9NPQ8 531 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 MSRAQ9UJ68 235 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 CHD9Q3L8U1 2897 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 CDH23Q9H251 3354 aa11.98□□□□□ -0.49
PRPF40B-204ENST00000527253 SMCO2A6NFE2 343 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 NOP56O00567 594 aaKnown RBP11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 TREHO43280 583 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 ARHGEF15O94989 841 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 CXCL10P02778 98 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 FOSL2P15408 326 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 ATP2A2P16615 1042 aaKnown RBP11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 RPS6KB1P23443 525 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 CLK2P49760 499 aaKnown RBP11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 RCAN1P53805 252 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 NAPAP54920 295 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 SP4Q02446 784 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 ADGRE1Q14246 886 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 RAB30Q15771 203 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 PKN1Q16512 942 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 FBXL16Q8N461 479 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 CCDC155Q8N6L0 562 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 USP26Q9BXU7 913 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 OSBPL7Q9BZF2 842 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 PRDM12Q9H4Q4 367 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 JADE2Q9NQC1 790 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 BARHL2Q9NY43 387 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 PKD2L1Q9P0L9 805 aa11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 NAP1L2Q9ULW6 460 aaPredicted RBP11.97□□□□□ -0.49
PRPF40B-204ENST00000527253 C17orf102A2RUQ5 167 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 SPDYE3A6NKU9 549 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 PPFIA3O75145 1194 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 REC8O95072 547 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 METAP2P50579 478 aaKnown RBP eCLIP11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 ADCY7P51828 1080 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 ADAM17P78536 824 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 NTRK3Q16288 839 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 PFKFB3Q16875 520 aaPredicted RBP11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 PPP1R18Q6NYC8 613 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 TMCO2Q7Z6W1 182 aaPredicted RBP11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 USP38Q8NB14 1042 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 ATP6V0A1Q93050 837 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 SETD4Q9NVD3 440 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 PCDHA11Q9Y5I1 949 aa11.96□□□□□ -0.49
PRPF40B-204ENST00000527253 NID2Q14112 1375 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 ARP10275 920 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 ACTN1P12814 892 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 TCF7P36402 384 aaPredicted RBP11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 THPOP40225 353 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 EVCP57679 992 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 FGD1P98174 961 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 MTMR1Q13613 665 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 TOB2Q14106 344 aaPredicted RBP11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 HERC6Q8IVU3 1022 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 PHKBQ93100 1093 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 PCYT2Q99447 389 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 MXRA8Q9BRK3 442 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 ANO3Q9BYT9 981 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 SLC28A3Q9HAS3 691 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 ZSWIM6Q9HCJ5 1215 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 KCNH7Q9NS40 1196 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 PTPRSQ13332 1948 aa11.95□□□□□ -0.5
PRPF40B-204ENST00000527253 hCG_1984214I3L0E3 225 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 MEIS1O00470 390 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 PRPF3O43395 683 aaKnown RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms