RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 BDP1A6H8Y1 2624 aa18.78■□□□□ 0.6
HIF3A-208ENST00000524533 XIRP2A4UGR9 3374 aa18.78■□□□□ 0.6
HIF3A-208ENST00000524533 MICAL3Q7RTP6 2002 aa18.78■□□□□ 0.6
HIF3A-208ENST00000524533 FIBPO43427 364 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 PRC1O43663 620 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 LGR5O75473 907 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 GJB5O95377 273 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 SMIM10L2AP0DMW4 78 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 SMIM10L2BP0DMW5 78 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 ICAM3P32942 547 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 THPOP40225 353 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 TFF2Q03403 129 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 GRB10Q13322 594 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 NEDD9Q14511 834 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 METTL7BQ6UX53 244 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 CUL5Q93034 780 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 ATP6V0A1Q93050 837 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 BCAS3Q9H6U6 928 aa18.77■□□□□ 0.6
HIF3A-208ENST00000524533 RSPH10B2B2RC85 870 aa18.76■□□□□ 0.59
HIF3A-208ENST00000524533 RSPH10BP0C881 870 aa18.76■□□□□ 0.59
HIF3A-208ENST00000524533 HOXC8P31273 242 aa18.76■□□□□ 0.59
HIF3A-208ENST00000524533 SEMA3FQ13275 785 aa18.76■□□□□ 0.59
HIF3A-208ENST00000524533 NFXL1Q6ZNB6 911 aa18.76■□□□□ 0.59
HIF3A-208ENST00000524533 CYFIP1Q7L576 1253 aa18.76■□□□□ 0.59
HIF3A-208ENST00000524533 GDPD5Q8WTR4 605 aa18.76■□□□□ 0.59
HIF3A-208ENST00000524533 RAD9AQ99638 391 aa18.76■□□□□ 0.59
HIF3A-208ENST00000524533 USP26Q9BXU7 913 aa18.76■□□□□ 0.59
HIF3A-208ENST00000524533 RTEL1Q9NZ71 1219 aa18.76■□□□□ 0.59
HIF3A-208ENST00000524533 SPATA31C2B4DYI2 1134 aa18.75■□□□□ 0.59
HIF3A-208ENST00000524533 PCNX4Q63HM2 1172 aa18.75■□□□□ 0.59
HIF3A-208ENST00000524533 FAM117BQ6P1L5 589 aa18.75■□□□□ 0.59
HIF3A-208ENST00000524533 USP17L6PQ6QN14 398 aa18.75■□□□□ 0.59
HIF3A-208ENST00000524533 GPR20Q99678 358 aa18.75■□□□□ 0.59
HIF3A-208ENST00000524533 LZTS2Q9BRK4 669 aa18.75■□□□□ 0.59
HIF3A-208ENST00000524533 MTA3Q9BTC8 594 aa18.75■□□□□ 0.59
HIF3A-208ENST00000524533 ZNF215Q9UL58 517 aaPredicted RBP18.75■□□□□ 0.59
HIF3A-208ENST00000524533 MTUS1Q9ULD2 1270 aa18.75■□□□□ 0.59
HIF3A-208ENST00000524533 TCF20Q9UGU0 1960 aaKnown RBP18.74■□□□□ 0.59
HIF3A-208ENST00000524533 LINC01553A4QN01 128 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 CCDC69A6NI79 296 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 RBAK-RBAKDNI3L0D1 243 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 PIK3CDO00329 1044 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 SH2B2O14492 632 aaPredicted RBP18.74■□□□□ 0.59
HIF3A-208ENST00000524533 TREHO43280 583 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 LPXNO60711 386 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 PLEKHA8P1O95397 391 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 AMHP03971 560 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 SMARCA1P28370 1054 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 MCM5P33992 734 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 GNAQP50148 359 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 KCNQ1P51787 676 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 XRRA1Q6P2D8 792 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 TRIM50Q86XT4 487 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 DBF4BQ8NFT6 615 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 TMEM87BQ96K49 555 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 TGS1Q96RS0 853 aaKnown RBP18.74■□□□□ 0.59
HIF3A-208ENST00000524533 RNPEPQ9H4A4 650 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 COG5Q9UP83 839 aa18.74■□□□□ 0.59
HIF3A-208ENST00000524533 MEIS2O14770 477 aa18.73■□□□□ 0.59
HIF3A-208ENST00000524533 CAND2O75155 1236 aa18.73■□□□□ 0.59
HIF3A-208ENST00000524533 GNAT1P11488 350 aa18.73■□□□□ 0.59
HIF3A-208ENST00000524533 BMP1P13497 986 aa18.73■□□□□ 0.59
HIF3A-208ENST00000524533 SP4Q02446 784 aa18.73■□□□□ 0.59
HIF3A-208ENST00000524533 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.73■□□□□ 0.59
HIF3A-208ENST00000524533 NLRX1Q86UT6 975 aa18.73■□□□□ 0.59
HIF3A-208ENST00000524533 TMTC2Q8N394 836 aa18.73■□□□□ 0.59
HIF3A-208ENST00000524533 NECAB3Q96P71 396 aaPredicted RBP18.73■□□□□ 0.59
HIF3A-208ENST00000524533 LSG1Q9H089 658 aaKnown RBP18.73■□□□□ 0.59
HIF3A-208ENST00000524533 CTSHP09668 335 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 CALM1P0DP23 149 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 CALM2P0DP24 149 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 CALM3P0DP25 149 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 RXRAP19793 462 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 ERVK-21P61565 698 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 MKRN4PQ13434 485 aaPredicted RBP18.72■□□□□ 0.59
HIF3A-208ENST00000524533 PLEKHG4Q58EX7 1191 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 UTP14CQ5TAP6 766 aaKnown RBP18.72■□□□□ 0.59
HIF3A-208ENST00000524533 MYOCDQ8IZQ8 938 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 SRBD1Q8N5C6 995 aaKnown RBP18.72■□□□□ 0.59
HIF3A-208ENST00000524533 HLA-CQ95604 372 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 SENP7Q9BQF6 1050 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 SETD4Q9NVD3 440 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 LMCD1Q9NZU5 365 aa18.72■□□□□ 0.59
HIF3A-208ENST00000524533 SLC27A2O14975 620 aa18.71■□□□□ 0.59
HIF3A-208ENST00000524533 CMTR1Q8N1G2 835 aaKnown RBP18.71■□□□□ 0.59
HIF3A-208ENST00000524533 GIMAP8Q8ND71 665 aaPredicted RBP18.71■□□□□ 0.59
HIF3A-208ENST00000524533 SEPT8Q92599 483 aa18.71■□□□□ 0.59
HIF3A-208ENST00000524533 ESYT1Q9BSJ8 1104 aa18.71■□□□□ 0.59
HIF3A-208ENST00000524533 SUGCTQ9HAC7 445 aa18.71■□□□□ 0.59
HIF3A-208ENST00000524533 INSL6Q9Y581 213 aa18.71■□□□□ 0.59
HIF3A-208ENST00000524533 NCOR1O75376 2440 aa18.71■□□□□ 0.59
HIF3A-208ENST00000524533 COL4A6Q14031 1691 aa18.7■□□□□ 0.58
HIF3A-208ENST00000524533 LIFRP42702 1097 aa18.7■□□□□ 0.58
HIF3A-208ENST00000524533 ARHGAP4P98171 946 aa18.7■□□□□ 0.58
HIF3A-208ENST00000524533 CREB3L3Q68CJ9 461 aa18.7■□□□□ 0.58
HIF3A-208ENST00000524533 RAB11FIP4Q86YS3 637 aa18.7■□□□□ 0.58
HIF3A-208ENST00000524533 LMBR1Q8WVP7 490 aa18.7■□□□□ 0.58
HIF3A-208ENST00000524533 GPRASP2Q96D09 838 aa18.7■□□□□ 0.58
HIF3A-208ENST00000524533 CDHR1Q96JP9 859 aa18.7■□□□□ 0.58
HIF3A-208ENST00000524533 PSTPIP2Q9H939 334 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms